LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g05237	ATGGCCACAGCGGAGCCAATCCACAACGGAACCTCCGAACCCGAACCCGAATCCGAATCCGCCGATAAGAGATGGCCAGGATGGCCCGGTCACTGCGTTTTCCGCCTAATCGTGCCGGTCCTCAAAGTCGGCAGCATCATCGGTCGCAAAGGTGAACTCATCAAGAAAACCTGCGAGGAAACACGTGCTCGCATTCGTGTTCTCGACGCTCCCCTCGGCACTCCCGATCGAATCGTACTTGTATCGGGGAAGGAAGAGCCAGAGGCACCTCTTTCTCCAGCAATGGATGCTGTAATTAGGGTTTTTAAACGTGTCTCGGGATTATCCGAAACTGATAGTGAGAATAAAACTTCAGGAGCTGCATTTTGTTCCATCCGTTTATTGGCGGCTTCAACACAGGCTATCAATTTGATTGGAAAGCAGGGATCGTTGATTAAATCTATACAGGAAAATACTGGTGCTTCTGTTAGAGTATTGTCTGGAGATGAGCTTCCATCGTATGCTGCCGCTGACGAGAGGATTGTGGAACTGCAAGGAGAAACCTTGAAGGTCCTTAAAGCTCTGGAAGCAGTAGTCAGGCACCTGAGGAAGTTTTTGGTTGATCATAGTGTTCTTCCCCAATTTGAGAAAACTGGCAATGTGACTATCTCCCAAGACCGACAAACAGATGCCTGGGCTGACAAACCATCGCTTCATACTGCTTCACAACCTAGCATTATTGCCGATATTCCTCTTTCAACAAAATGGGATTCCCTTTTTGCCGACCGTGAAAGTCAATTGGATTCATTGCTCCCTTCCTCCACGATGTCACTATATGGGCATGATTCTTCACTTTCTGGTCTTCGTTCTTCGGCTCTTAGTCGTGCTGGTGCTCCTCCCATTGTTACAACGGTAATACAAACAATGCAAATACCGCTGTCCTATGCAGAGGACATAATTGGTGTACAAGGGTCTAATATTGATTACATTCGCCGTACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGGTGCCTGATGAAATCATTGTGGAGATAAAAGGCACCTCATCTCAGGTTCAAACAGCGCAACAATTGATTCAGGAAGTTATAAGCAATCACAAAGAACCTGTCGCTAGTAGTTACGGCAGGTTAGATACGGGTCTTAGGTCTTCTTACTCTCAATTGGGCAGTTCATCGTACTCCTCATCTTCCTTGTCCTCACAACCCTTCAGTGGGTATGGATCTTCTGGTGTAGGAGGCTATAGTACTTTCAGACTTTAA	1263	0.4703	MATAEPIHNGTSEPEPESESADKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGKEEPEAPLSPAMDAVIRVFKRVSGLSETDSENKTSGAAFCSIRLLAASTQAINLIGKQGSLIKSIQENTGASVRVLSGDELPSYAAADERIVELQGETLKVLKALEAVVRHLRKFLVDHSVLPQFEKTGNVTISQDRQTDAWADKPSLHTASQPSIIADIPLSTKWDSLFADRESQLDSLLPSSTMSLYGHDSSLSGLRSSALSRAGAPPIVTTVIQTMQIPLSYAEDIIGVQGSNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPVASSYGRLDTGLRSSYSQLGSSSYSSSSLSSQPFSGYGSSGVGGYSTFRL*	421

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g05237	420	Gene3D	-	31	201	-	-
	Rops2g05237	420	Pfam	KH domain	34	86	IPR004088	GO:0003723
	Rops2g05237	420	Pfam	KH domain	300	362	IPR004088	GO:0003723
	Rops2g05237	420	Pfam	KH domain	131	191	IPR004088	GO:0003723
	Rops2g05237	420	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	24	86	IPR036612	GO:0003723
	Rops2g05237	420	Gene3D	K Homology domain, type 1	295	370	IPR036612	GO:0003723
	Rops2g05237	420	CDD	KH-I_PEPPER_rpt2_like	126	196	-	-
	Rops2g05237	420	ProSiteProfiles	Type-1 KH domain profile.	297	360	-	-
	Rops2g05237	420	SMART	kh_6	121	196	IPR004087	GO:0003676
	Rops2g05237	420	SMART	kh_6	30	103	IPR004087	GO:0003676
	Rops2g05237	420	SMART	kh_6	296	365	IPR004087	GO:0003676
	Rops2g05237	420	ProSiteProfiles	Type-1 KH domain profile.	122	191	-	-
	Rops2g05237	420	ProSiteProfiles	Type-1 KH domain profile.	31	98	-	-
	Rops2g05237	420	MobiDBLite	consensus disorder prediction	1	24	-	-
	Rops2g05237	420	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	117	206	IPR036612	GO:0003723
	Rops2g05237	420	PANTHER	KH DOMAIN CONTAINING RNA BINDING PROTEIN	22	385	-	-
	Rops2g05237	420	CDD	KH-I_PEPPER_rpt1_like	31	99	-	-
	Rops2g05237	420	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	293	366	IPR036612	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g05237	Rops-Chr2	93508817	93512782	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g05237	K21444		-	gmx:100807645	627.861

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops2g05237	2	93508817	93512782	Rops2g05237	2	93508817	93512782	ECH
	Rops2g05237	2	93508817	93512782	Rops11g01734	11	27369780	27383628	PCT