Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01734 ATGGCCACCGCGGAACCAAACCAAAACGGCGCCGCCACTGCCTCAGACCCATTCCCTCCTGAAAATTCCTCCGCCGACGACTTCGCCGCCGCCAACGCAGACGAAACTGCCGCCGACGCCACCCCAGCGGCCAATCCACCTACTCAGGAGGAGCCAGAGACTGAAGCCACCACCGCAACCGCCACCGCCACCACTCCACAGGAGAAGAGATGGCCAGGTTGGCCCGGCGACTGCGTTTTCCGGCTCATCGTGCCGGTCGGCAAAGTCGGTAGCATCATCGGTCGCAAAGGAGAGCTCATCAAGAAGATGTGTGAAGAGACTCGAGCTCGCATTCGCGTTCTCGATGGTGCTGTTGGCACTCCTGATCGAATTGTACTCATATCAGGGAAGGAAGAGCCAGAGGCAGCTCTTTCCCCTGCAATGGATGCTGTGATAAGGGTATTCAAACGTGTCTCTGGATTATCTGATACTGTCGGTGAGAATAAAGAATCCGCTGGGGTTCCATTTTGTTCCATCCGTTTATTGGTGGCATCAACCCAGGCTATCAATTTGATTGGAAAGCAAGGCTCGTTAATCAGATCCATACAGGAGAGTACTGGTGCTTCTGTTAGAGTACTGTCAGGAGATGAGGTGCAATTTTATGCTACTGCGGATGAGAGGATTGTGGAAATGCAGGGAGAGGCCTTGAAGGTCCTCAAAGCTTTGGAAGCAGTGGTTGGGCATCTGAGGAAGTTTTTGGTTGATCGTAGTGTTCTTCCCCTGTTTGAGAAAACTTACAATGCGCCTATCACACAAGAGCGTCAAGCAGAGACCTGGTCTGACAAGTCATTGCTGCATACTACTTCACAAACTAGCATATTTTCTGATATTCCTCTTTCAACAAAAAGGGATTCTGTTTTTGCTGACCGTGAAAGTCAACTGGACTCATTACACCCTTCTTCCAGTATGTCTCTCTATGGGCAAGATTCTTCACTTCCTAGTGTCCGTTCTTCAGCTCTTAGTCGTGTTGGTGCTCCTATTGTTACTACGGTAATTCAAACAATGCAAATACCACTATCCTATGCGGAGGACATCATTGGTATTCAAGGGACTAATATTGATTATATTCGCCGCACTAGTGGAGCCATATTGACTGTGCAGGAAAGCAGGGTGCCTGATGAAATCATCGTGGAAATAAAAGGCACTTCATCTCAGGTTCAAACGGCACAGCAGTTGATTCAGGACGTAATAAGCAATCACAAAGAACCTGTGACCAGCAGTTACGGCAGGTTAGATGCAGGTCTGAGGTCATCATACTCTCAACAGTTGGGCAATACATCACGCTTCTCATCTTCATTGTCCTCACAGCCATACTCAAGTTATGGAGCATCTGGTTTGGGAGACTACAGTACTTTCAGACTTTAA 1404 0.4879 MATAEPNQNGAATASDPFPPENSSADDFAAANADETAADATPAANPPTQEEPETEATTATATATTPQEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTPDRIVLISGKEEPEAALSPAMDAVIRVFKRVSGLSDTVGENKESAGVPFCSIRLLVASTQAINLIGKQGSLIRSIQESTGASVRVLSGDEVQFYATADERIVEMQGEALKVLKALEAVVGHLRKFLVDRSVLPLFEKTYNAPITQERQAETWSDKSLLHTTSQTSIFSDIPLSTKRDSVFADRESQLDSLHPSSSMSLYGQDSSLPSVRSSALSRVGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQDVISNHKEPVTSSYGRLDAGLRSSYSQQLGNTSRFSSSLSSQPYSSYGASGLGDYSTFRL* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01734 467 Pfam KH domain 80 133 IPR004088 GO:0003723
Rops11g01734 467 Pfam KH domain 172 238 IPR004088 GO:0003723
Rops11g01734 467 Pfam KH domain 346 408 IPR004088 GO:0003723
Rops11g01734 467 CDD KH-I_PEPPER_rpt2_like 173 243 - -
Rops11g01734 467 Gene3D - 77 246 - -
Rops11g01734 467 MobiDBLite consensus disorder prediction 1 20 - -
Rops11g01734 467 CDD KH-I_PEPPER_rpt1_like 77 145 - -
Rops11g01734 467 SMART kh_6 168 243 IPR004087 GO:0003676
Rops11g01734 467 SMART kh_6 342 411 IPR004087 GO:0003676
Rops11g01734 467 SMART kh_6 76 149 IPR004087 GO:0003676
Rops11g01734 467 MobiDBLite consensus disorder prediction 47 67 - -
Rops11g01734 467 ProSiteProfiles Type-1 KH domain profile. 77 144 - -
Rops11g01734 467 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 66 431 - -
Rops11g01734 467 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 167 251 IPR036612 GO:0003723
Rops11g01734 467 ProSiteProfiles Type-1 KH domain profile. 169 238 - -
Rops11g01734 467 ProSiteProfiles Type-1 KH domain profile. 343 406 - -
Rops11g01734 467 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 71 132 IPR036612 GO:0003723
Rops11g01734 467 Gene3D K Homology domain, type 1 341 416 IPR036612 GO:0003723
Rops11g01734 467 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 339 412 IPR036612 GO:0003723
Rops11g01734 467 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01734 Rops-Chr11 27369780 27383628 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01734 K21444 - gmx:100815466 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01734 11 27369780 27383628 Rops11g01734 11 27369780 27383628 ECH
Rops2g05237 2 93508817 93512782 Rops11g01734 11 27369780 27383628 PCT