LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g05209	ATGGCAAATAAGATACTTATTGGCCTTCTCCTCATCACCTTTGTGGTAGTGGCCTCTGCTGGTAACTTCAACCAAGACTTTGAGATAACATGGGGTGATGGTCGTGCCAAAATCCTCAACGATGGGCAGCTTCTTACCCTGTCCCTAGACAAGGCCTCTGGCTCTGGATTTCGTTCCAGAAACGAGTACTTGTTTGGAAAAATTGACATTCAATTAAAGCTTGTGCCTGGTAACTCTGCAGGCACAGTCACAGCCTATTATCTATCTTCTCTTGGGGATGCTCATGATGAAATAGATTTTGAGTTTCTGGGTAACTTAAGTGGTGATCCTTATACTCTTCATACAAACGTATTCACACAAGGGAAAGGCAACAGAGAGCAGCAGTTCCATTTGTGGTTCGACCCCACCAAGAACTTCCACACATATTCCATTCTTTGGAATCCTCAAAGCATCATATTCTCTGTGGATGGGACACCCATAAGGGAGTTCAAGAATTTGGAATCAAAAGGAGTTGCTTTTCCAAAAAACCAAGCCATGAGGTTATATTCTAGCCTTTGGAATGCAGATGATTGGGCCACAAGGGGTGGCCTAGTGAAGACTGATTGGAGCCGAGCCCCATTTACTGCCTCCTATAGAAAATTCAATGCCCAAGCTTGTGTTTGGACTTCTTCTTCAGGCTCCTCTTGCTCTTCGTCCACAAACCAAACATGGTTGAAACAATCACTGGATGCAACAGGGCAAGCTAGAATTCAATGGGTGCAAAAGAACTACATGATTTACAACTACTGCACTGATACTAAACGCTTCCCACAAGGCCTCCCTCCTGAATGCTCACTTGCATGA	843	0.4437	MANKILIGLLLITFVVVASAGNFNQDFEITWGDGRAKILNDGQLLTLSLDKASGSGFRSRNEYLFGKIDIQLKLVPGNSAGTVTAYYLSSLGDAHDEIDFEFLGNLSGDPYTLHTNVFTQGKGNREQQFHLWFDPTKNFHTYSILWNPQSIIFSVDGTPIREFKNLESKGVAFPKNQAMRLYSSLWNADDWATRGGLVKTDWSRAPFTASYRKFNAQACVWTSSSGSSCSSSTNQTWLKQSLDATGQARIQWVQKNYMIYNYCTDTKRFPQGLPPECSLA*	281

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g05209	280	SUPERFAMILY	Concanavalin A-like lectins/glucanases	22	279	IPR013320	-
	Rops2g05209	280	PIRSF	EndGlu_transf	1	280	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Rops2g05209	280	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	17	211	IPR000757	GO:0004553\|GO:0005975
	Rops2g05209	280	PRINTS	Glycosyl hydrolase family 16 signature	113	126	IPR008264	GO:0004553\|GO:0005975
	Rops2g05209	280	PRINTS	Glycosyl hydrolase family 16 signature	55	73	IPR008264	GO:0004553\|GO:0005975
	Rops2g05209	280	PRINTS	Glycosyl hydrolase family 16 signature	131	148	IPR008264	GO:0004553\|GO:0005975
	Rops2g05209	280	CDD	GH16_XET	18	277	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Rops2g05209	280	Pfam	Glycosyl hydrolases family 16	24	204	IPR000757	GO:0004553\|GO:0005975
	Rops2g05209	280	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	97	107	IPR008263	GO:0004553\|GO:0005975
	Rops2g05209	280	Gene3D	-	10	279	-	-
	Rops2g05209	280	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	233	277	IPR010713	GO:0005618\|GO:0016762\|GO:0044042\|GO:0048046
	Rops2g05209	280	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	20	277	IPR044791	GO:0004553
	Rops2g05209	280	FunFam	Xyloglucan endotransglucosylase/hydrolase	10	279	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g05209	Rops-Chr2	92973187	92974667	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g05209	6	280	Glycoside Hydrolase	AT4G25810	72.760	2.17e-154	430

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g05209	K14504		-	gmx:100807063	525.398

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops2g05209	2	92973187	92974667	Rops11g01768	11	28344127	28348042	PCT