Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01768 ATGCCTGGCAACCACTTTTCTTGCCTTGTGGTCCTCACCCTGAACCCCATTGGTTCCCTCATACCTAATGCTGTCCAACTCTTGTGGAAATTCGTCTTAGCCAAATACTTATCTTGGCATCTTTTGTCCCTCTCTCTCTCTCTAATTTTTGTTGCTATAGTTACCAACCAACCAAAGGCATTACTTGGAAAAGGTTGTATTAAAATGAGAAGTAATTTCCCTATTGGATTTCTTCTTCTTATAGCCACCTTTGTGGTGGCTGCCTCAGCTGGTAACTTTTACCAAGACTTTGAAACAACATGGGGTGATGGCCGTGCCAAAATCCTTGAAAATGGGCAGCTTCTCACCCTTTCCTTGGACAAGGCCTCTGGCTCTGGCTTTCGTTCCAAAAATGAGTACTTGTTTGGTAAAATTGACATGAAGCTCAAACTCGTGCCTGGTAACTCTGCTGGCACCGTCACAGCTTATTATCTATCTTCTCTGGGGTCTACTCATGATGAAATAGACTTTGAATTTCTGGGTAACTTGAGTGGTGATCCATATATTCTTCATACGAACGTATTCACACAAGGGAAAGGGAATAGAGAGCAACAATTCTATCTTTGGTTCGACCCCACCAAGGACTTCCACACATATTCCATTCTTTGGAATCCTCAAAGCATCATATTCTCTGTGGATGGGACACCAATAAGGGAGTTCAAGAATATGGAGTCAAAAGGGGTTCCTTTTCCGAAGAACCAAGCCATGAGGATATACTCTAGTCTTTGGAATGCTGATGATTGGGCCACAAGGGGTGGCCTGGTTAAGACAGATTGGAGCCAAGCCCCATTCACTGCCTCATATAGAAACTTCAATGCCCAAGCTTGTGTTTGGACTTCTTCAGGCTCATCTTGTTCTTCCAACAATTCTCCATCAGGCCAATCTTGGTTGAAAGAATCAATGGACTCAACTGGGCTAGCCAAAATTCATTGGGTACAAAAGAACTACATGATTTACAACTACTGCACCGATACCAAGCGTTTCCCACAAGGCCTGCCTCCTGAATGCTCATTTGCTTGA 1059 0.4363 MPGNHFSCLVVLTLNPIGSLIPNAVQLLWKFVLAKYLSWHLLSLSLSLIFVAIVTNQPKALLGKGCIKMRSNFPIGFLLLIATFVVAASAGNFYQDFETTWGDGRAKILENGQLLTLSLDKASGSGFRSKNEYLFGKIDMKLKLVPGNSAGTVTAYYLSSLGSTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTKDFHTYSILWNPQSIIFSVDGTPIREFKNMESKGVPFPKNQAMRIYSSLWNADDWATRGGLVKTDWSQAPFTASYRNFNAQACVWTSSGSSCSSNNSPSGQSWLKESMDSTGLAKIHWVQKNYMIYNYCTDTKRFPQGLPPECSFA* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01768 352 FunFam Xyloglucan endotransglucosylase/hydrolase 80 351 - -
Rops11g01768 352 CDD GH16_XET 88 349 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops11g01768 352 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 87 281 IPR000757 GO:0004553|GO:0005975
Rops11g01768 352 SUPERFAMILY Concanavalin A-like lectins/glucanases 93 351 IPR013320 -
Rops11g01768 352 PRINTS Glycosyl hydrolase family 16 signature 201 218 IPR008264 GO:0004553|GO:0005975
Rops11g01768 352 PRINTS Glycosyl hydrolase family 16 signature 183 196 IPR008264 GO:0004553|GO:0005975
Rops11g01768 352 PRINTS Glycosyl hydrolase family 16 signature 125 143 IPR008264 GO:0004553|GO:0005975
Rops11g01768 352 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 305 349 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Rops11g01768 352 Gene3D - 79 351 - -
Rops11g01768 352 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 87 349 IPR044791 GO:0004553
Rops11g01768 352 Pfam Glycosyl hydrolases family 16 94 273 IPR000757 GO:0004553|GO:0005975
Rops11g01768 352 ProSitePatterns Glycosyl hydrolases family 16 active sites. 167 177 IPR008263 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01768 Rops-Chr11 28344127 28348042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01768 78 349 Glycoside Hydrolase AT4G25810 74.725 2.05e-153 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01768 K14504 - gmx:100807063 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05209 2 92973187 92974667 Rops11g01768 11 28344127 28348042 PCT