Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05035 ATGGCTTCCATATCTCTTTCCTTCTCTTCTTCCATCGTTCCCTCTCCAATTCCCCATGATAAATGCCATAAAACTCACAACCCCAGATCCCAAGATCCAATTTTTCGAGTTACCCGCTTCTCAATTTCAGCTCCTGCATCCAGAACTGCTTCTGCTTCATCGTTGGGTCTCAAAAAGAGACACTGGAAACAAGGAGAGTTTCCTGGTATTTCAGAAACTGGGAGTACGAGAAGGAGCCCAATTAAGAACGTGAAAAAGAAGTTGGATAGAAAGAACAATGCTAAGGCATGGGTTAACACTGTTACTGAAGCCTTATCCGAAAGCATTGACAAGAAGCAGTGGCTTCAAGCCCTTGAGATATTTGACATGCTTAAAGAACAATCCTTTTACCAACCCAAAGAAGGGACTTACATGAAACTCATTGTGTTGCTTGGAAAATCTGGTCAACCCCACCGTGCTCATCAGCTTTTTACCAAAATGATTGAAGAAGGTTGTGACCCTACTCCTGAACTATACACAGCATTACTTGCTGCATATTGCAGGAGCAACATGATTGATGAGGCATTTTCAATTCTTAATGAGATGAAGAACCATCCATTTTGCCAGCCTGATGTTTTCTCTTACAGCACTTTAATAAAACCCTGTGTGGATGCTTTCAAATTTGATTTGGTTGAGTTGCTGTATGAGGAAATGGCCGAAAGATCTATCACGCCTAACACTGTCACTCAGAACATTGTTTTGAGTGGTTATGGCAAGGCAGGGAAGTTTGATCAGATGGAGAAAGTGCTGTCAAGTATGCTGGAGAGCACTACGTGCAAGCCTGATGTTTGGACGATGAACACAATCATTAGTGTCTTTGGTAATATGGGTCAGATGGATATGATGGAGAGATGGTATGAAAAATTCCGAAATTTCGGGATAGAACCAGAAACGCGCACTTTTAATATCTTGATTGGTGCCTATGGAAAGAAAAGAATGTATGACAAAATGTCATCTGTCATGGAGTATATGCGTAAGTTGCAATTTCCATGGACCACCTCTACTTATAACAATGTTATTGAGGCATTCGCAGATGCAGGTGATGCTAAACACATGGAGTATACATTTGATCAGATGCGTGCTGAGGGTATGAAAGCAGATACCAAGACTTTCTGCTGCCTTATCAATGGTTTTGCAAATGCAGGTCTCTTCCATAAAGTAATTAGCAGTGTTCACTTGGCTAAGAAGTTTGAGATACCTGAGAACACTGTCTTTTATAACACAGTCTTATCTGCATGTGTAAAGGCAGAGGATTTAATGGAAATGGAGAGAGTTTTCAAGCGTATGAAAGATAACCAATGTCAACCAGATGACACAACATTCTCTATCATGGTAGAGGCATATAGGAAAGAGGGTATGAATGACAAAATATACTATTTGGAGCAGGAAAAGCAGACAATGGTAACTAATGATATAAAAGTGAGCCAGCCTGAGGATGAAATCTTTAGTTGA 1491 0.4051 MASISLSFSSSIVPSPIPHDKCHKTHNPRSQDPIFRVTRFSISAPASRTASASSLGLKKRHWKQGEFPGISETGSTRRSPIKNVKKKLDRKNNAKAWVNTVTEALSESIDKKQWLQALEIFDMLKEQSFYQPKEGTYMKLIVLLGKSGQPHRAHQLFTKMIEEGCDPTPELYTALLAAYCRSNMIDEAFSILNEMKNHPFCQPDVFSYSTLIKPCVDAFKFDLVELLYEEMAERSITPNTVTQNIVLSGYGKAGKFDQMEKVLSSMLESTTCKPDVWTMNTIISVFGNMGQMDMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKHMEYTFDQMRAEGMKADTKTFCCLINGFANAGLFHKVISSVHLAKKFEIPENTVFYNTVLSACVKAEDLMEMERVFKRMKDNQCQPDDTTFSIMVEAYRKEGMNDKIYYLEQEKQTMVTNDIKVSQPEDEIFS* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05035 496 PANTHER EXPRESSED PROTEIN 44 476 IPR044179 GO:0003729
Rops2g05035 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Rops2g05035 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Rops2g05035 496 Gene3D Tetratricopeptide repeat domain 267 360 IPR011990 GO:0005515
Rops2g05035 496 Gene3D Tetratricopeptide repeat domain 361 495 IPR011990 GO:0005515
Rops2g05035 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Rops2g05035 496 Gene3D Tetratricopeptide repeat domain 88 266 IPR011990 GO:0005515
Rops2g05035 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Rops2g05035 496 NCBIfam pentatricopeptide repeat 348 380 IPR002885 -
Rops2g05035 496 NCBIfam pentatricopeptide repeat 313 341 IPR002885 -
Rops2g05035 496 NCBIfam pentatricopeptide repeat 136 168 IPR002885 -
Rops2g05035 496 NCBIfam pentatricopeptide repeat 241 276 IPR002885 -
Rops2g05035 496 NCBIfam pentatricopeptide repeat 278 309 IPR002885 -
Rops2g05035 496 NCBIfam pentatricopeptide repeat 418 450 IPR002885 -
Rops2g05035 496 NCBIfam pentatricopeptide repeat 171 204 IPR002885 -
Rops2g05035 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Rops2g05035 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Rops2g05035 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 274 IPR002885 -
Rops2g05035 496 Pfam PPR repeat 136 165 IPR002885 -
Rops2g05035 496 Pfam PPR repeat 244 269 IPR002885 -
Rops2g05035 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Rops2g05035 496 Pfam PPR repeat family 415 461 IPR002885 -
Rops2g05035 496 Pfam PPR repeat family 274 321 IPR002885 -
Rops2g05035 496 Pfam PPR repeat family 172 215 IPR002885 -
Rops2g05035 496 Pfam PPR repeat family 346 393 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05035 Rops-Chr2 90350592 90353165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05035 119 476 Glycosyltransferase AT1G05670 24.033 5.45e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05035 - - aip:107635404 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05035 2 90350592 90353165 Rops2g05035 2 90350592 90353165 ECH
Rops2g05035 2 90350592 90353165 Rops11g01950 11 31478329 31484284 PCT