Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops11g01950 | ATGGCTTCAATATCACTCTCATTTTCTTCTTCAATTCTTCCATCATCTACCATTCCCCATGTCAAATCCAACGCGAACCCGATAACCCAAGACCCGATTTTTCGGGTTACCCGCTGCTCAATTTCGGCTCCACCGTCAAAAACTGCTGCAATTTCATCGCAAAACAAACACCGGAAAGAAGAGGAATTTCCTACAGAATTGTTTTTTGAGAGTACAACCAAGACACCCATTGATAAGAAGAAGAAAAAGAAGAAGAAAAAGGTGAACAAAGAGAACAATGGAAAGGCCTGGGCCCCCACTCTCGTCGAAGCCTTATCTTATAGCATTCACAAGAAGCAATGGCTTAAAGCCCTTGAGTTGTTTGACATGCTTAGAGAGCAACCCTATTATGAACCCAAAGAAAAGACTTATATGAAACTCATTGTGTTGCTTGGAAAATCTGGCCAACCCCATCCTGCCCATCAACTTTTCAACACTATAAAAGAAGATGGTTGTGAAAGTACCAGACTTTACACAGCCTTAATTGCAGCGTATTGTCAGAACAACCTGGTTGATGAGGCATTTTTTACTCTTGATGAGATGAAGAACCTCCCTCAATACCAGCCTGATGTTTTCACTTACAGTACCTTGATAAAAGCTCATGTGGATGCTTTGAAATTTGAGCTGGTTGAGTTGCTGTATGAAGAGATGGCTGAAAGATCTATCACACCAAACACTTCCACTCAGAGTATTGTCCTCAGTGGTTATGGGAATGCTGGGAGGTTTGATGAGATGGAGAAAATGCTGTCAAGTATGATGGAGAGCACTACACTGAAGCCTGATGTTTCGACATTGAACACAGTCATCAGTGTCTTTGGTAATAAGGGTCAGATTGATATGATGGAGAAATGGTATGAAAAATTCCGTAATTTTGGGATACAACCAGAAATACAAACATATAATATTTTGATTGGAGCTTATGGGAATAGAAGACTGTATGACAAAATGTCATCTGTTATGCAGTATATGCGCAAAGTACGATGTCCATGGATGACCTCAACTTATAACAACGTGATTGAGGCATTTGCAGCCATAGGTGATGCTGAAAACATGGAATCTACATTTGATCAGATGTGTGCTGAGGGTTTGAAAGCAAATACCAAGACTTTCTGCTGCCTTATCGATGGTTATGGTAATGCAGGTATCTTCCATAAAGTAATTAGCAGTGTTAATTTGGCAAGGAGGCTTCGGATACGTGAGAATACTTCCTTTTACAATGTAGTCATATCTGCATGTGCAAAGACAGAGGTTTTCATGGAAATGGAAAGATTTTTCAAGTGTATGAAAGAAAAACAATGTCAACCAGATGACACAACATACTCTGTCATGATTGAGGCATACAGAAAAGAAGGTATGAATGACAAGATTTACTGCTTGGAGCAGGAAAAGCAGATGATGATATCTGATGACAAAAAATTGAGTGAGCCTGAGGAGGCAATCCTTGGTTGA | 1488 | 0.3999 | MASISLSFSSSILPSSTIPHVKSNANPITQDPIFRVTRCSISAPPSKTAAISSQNKHRKEEEFPTELFFESTTKTPIDKKKKKKKKKVNKENNGKAWAPTLVEALSYSIHKKQWLKALELFDMLREQPYYEPKEKTYMKLIVLLGKSGQPHPAHQLFNTIKEDGCESTRLYTALIAAYCQNNLVDEAFFTLDEMKNLPQYQPDVFTYSTLIKAHVDALKFELVELLYEEMAERSITPNTSTQSIVLSGYGNAGRFDEMEKMLSSMMESTTLKPDVSTLNTVISVFGNKGQIDMMEKWYEKFRNFGIQPEIQTYNILIGAYGNRRLYDKMSSVMQYMRKVRCPWMTSTYNNVIEAFAAIGDAENMESTFDQMCAEGLKANTKTFCCLIDGYGNAGIFHKVISSVNLARRLRIRENTSFYNVVISACAKTEVFMEMERFFKCMKEKQCQPDDTTYSVMIEAYRKEGMNDKIYCLEQEKQMMISDDKKLSEPEEAILG* | 496 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops11g01950 | 495 | NCBIfam | pentatricopeptide repeat | 277 | 308 | IPR002885 | - | |
| Rops11g01950 | 495 | NCBIfam | pentatricopeptide repeat | 205 | 239 | IPR002885 | - | |
| Rops11g01950 | 495 | NCBIfam | pentatricopeptide repeat | 170 | 196 | IPR002885 | - | |
| Rops11g01950 | 495 | NCBIfam | pentatricopeptide repeat | 418 | 449 | IPR002885 | - | |
| Rops11g01950 | 495 | NCBIfam | pentatricopeptide repeat | 241 | 274 | IPR002885 | - | |
| Rops11g01950 | 495 | NCBIfam | pentatricopeptide repeat | 347 | 379 | IPR002885 | - | |
| Rops11g01950 | 495 | NCBIfam | pentatricopeptide repeat | 312 | 341 | IPR002885 | - | |
| Rops11g01950 | 495 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 274 | 308 | IPR002885 | - | |
| Rops11g01950 | 495 | Pfam | PPR repeat | 244 | 268 | IPR002885 | - | |
| Rops11g01950 | 495 | Pfam | PPR repeat | 136 | 165 | IPR002885 | - | |
| Rops11g01950 | 495 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 203 | 237 | IPR002885 | - | |
| Rops11g01950 | 495 | Gene3D | Tetratricopeptide repeat domain | 266 | 343 | IPR011990 | GO:0005515 | |
| Rops11g01950 | 495 | Gene3D | Tetratricopeptide repeat domain | 198 | 265 | IPR011990 | GO:0005515 | |
| Rops11g01950 | 495 | Gene3D | Tetratricopeptide repeat domain | 346 | 491 | IPR011990 | GO:0005515 | |
| Rops11g01950 | 495 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 414 | 448 | IPR002885 | - | |
| Rops11g01950 | 495 | PANTHER | EXPRESSED PROTEIN | 47 | 475 | IPR044179 | GO:0003729 | |
| Rops11g01950 | 495 | Gene3D | Tetratricopeptide repeat domain | 69 | 197 | IPR011990 | GO:0005515 | |
| Rops11g01950 | 495 | Pfam | PPR repeat family | 273 | 320 | IPR002885 | - | |
| Rops11g01950 | 495 | Pfam | PPR repeat family | 414 | 460 | IPR002885 | - | |
| Rops11g01950 | 495 | Pfam | PPR repeat family | 345 | 390 | IPR002885 | - | |
| Rops11g01950 | 495 | Pfam | PPR repeat family | 170 | 214 | IPR002885 | - | |
| Rops11g01950 | 495 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 167 | 197 | IPR002885 | - | |
| Rops11g01950 | 495 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 344 | 378 | IPR002885 | - | |
| Rops11g01950 | 495 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 238 | 273 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops11g01950 | Rops-Chr11 | 31478329 | 31484284 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops11g01950 | 170 | 464 | Miscellaneous Gene Families | AT4G11690 | 26.333 | 8.10e-22 | 96.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops11g01950 | - | - | gmx:100776657 | 631.713 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Rops11g01950 | 11 | 31478329 | 31484284 | Rops11g01950 | 11 | 31478329 | 31484284 | ECH | |
| Rops2g05035 | 2 | 90350592 | 90353165 | Rops11g01950 | 11 | 31478329 | 31484284 | PCT |