Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05017 ATGAAAGGGCTATATTTAGTTCAAGGGTTACTGAAAATGAAGAAGTGGTACGGGGGCCTGTTGATCATGGCTCTGGGTATGATGTTGTTTCTACTCTACAGCCTTAAAGAATATCAGCCACAGAAGCAGTCAGAAAAACAGTCAGCATACAGTTTTTTCAATAACCATTCGCCAAATGATTCTGTTAAGGGAAGCATCGATCTTCCAGTAAACTCATCTGAGATAGAACTAAAAAAGGTACCAGAACCAGCAAAAAAGCCACATTTGGTACATGTTGCAGGGCTTGATGATCTGTATAAGATGAAATATTTATCTGAAGGAGAGATGAATGCTGTGCTTGTTTGGACTTCCTTACGATCCTTGTTGTCGAGGTCAGATGCTTTGCCTGAAACTGCTCAAGGAGTTAAAGAGGCTTCTGTAGCATGGAAAGAGTTGATGTCCACAATTGACAAGGACAAAGCCTCTAAGACTAGTAAGACAGGCAGCCCAGCAAATCAAAGCTGCCCATTCTCTGTGACCACACCTGGTAAGACAGCAGTGGATAGTGGAATCACTTTGGATCTCCCCTGTGGTCTGGTCGAAGATTCTTCTATTACACTGATTGGCATCCCTAATGGACAAAACAGAAGCTTTCAGATTGACCTAGCTGGGCAAGAGCTAGAAGAGGAGCTAAATCCTCCCATTATCTTGCATTACAATGTCAGTATTCCTGGAGAAAACATGACAGAGGAACCATATATTGTTCAAAATACATGGACTAGTGATTTTGGGTGGGGAAAAGAGGAAAGGTGTCCTGCTCATGGTTCTGCTAACAGCCAAAAAGTTGATGGACTTGTTCTCTGCAATGTGCAAGTTGTCAGAAGTAACAACGAAGAGAATGTAAATGTGGGTCAGCCTACTAGTGATATTCCTTCTAATAGTTCCTCAGAAAGTGCACATAGAACTGCTAATTTCCCCTTTGCCGAGGGTAATCCTTTCACTGCCACATTATGGGTTGGTTCAGAGGGATTTCATATGACTGTGAACGGCAGGCATGAAACATCTTTTGCTTATAGGGAGAAGCTTGAACCATGGTTAGTCAGTACTGTTAAAGTAGCAGGCAGTTTAAGCCTCTTATCAGTCCTGGCTAAAGGTTTACCTGTTACCGAAGATAATGATATAGTTGTTGATGTTGAGAAACTGAAGGCTCCTTCTATCCCTGGAAAAAGGCTTGTTTTGTTGATTGGAGTATTCTCTACTGGAAATAACTTTGAGCGTCGAATGGCCTTGAGGAGGTCTTGGATGCAATATGAGGCTGTACGTTCTGGAGAAGTTGCTGTCCGATTTTTCATTGGACTTCACAAGAACAATAGAGTTAATTTTGAGTTATGGAGTGAAGCTCAAGCTTATGGAGATATTCAGTTAATGCCTTTTGTTGATTATTATAGTTTGATTTCTTTGAAGACAATTGCAATTTGCATTATGGGGACAAAAATCATCCCTTCTAAATACATCATGAAAACGGATGATGATGCTTTTGTTAGGATTGATGAAGTGCTTTCCAGCCTCAAAGGTAAGCCCTCCGAAGGCCTCTTGTACGGTCTCATATCTTCGAAATCATCCCCTCAGAGGGATCAAGGCAGCAAGTGGTACATCAGTGAGAAGGAATGGCCACATGATACATACCCACCGTGGGCACATGGTCCTGGCTATGTCATCTCTCGAGACATAGCAAAATTCATTGTCCATGGCCACCAGGAAAGAAAACTCCAGCTCTTTAAATTAGAAGATGTTGCCATGGGCATATGGATTGAACAGTTCAAGAATGGTGGCAAAGAAGTGCATTATGAGAATGATGAGAGGTTCTACAATGCTGGATGTGAATCAAATTATGTGCTTGCCCATTATCAGAGCCCAAGGATGGTGCTGTGCCTTTGGGAGAAACTGCAGAAAGAACACAAGCCAGAATGCTGTGAGTAG 1959 0.4211 MKGLYLVQGLLKMKKWYGGLLIMALGMMLFLLYSLKEYQPQKQSEKQSAYSFFNNHSPNDSVKGSIDLPVNSSEIELKKVPEPAKKPHLVHVAGLDDLYKMKYLSEGEMNAVLVWTSLRSLLSRSDALPETAQGVKEASVAWKELMSTIDKDKASKTSKTGSPANQSCPFSVTTPGKTAVDSGITLDLPCGLVEDSSITLIGIPNGQNRSFQIDLAGQELEEELNPPIILHYNVSIPGENMTEEPYIVQNTWTSDFGWGKEERCPAHGSANSQKVDGLVLCNVQVVRSNNEENVNVGQPTSDIPSNSSSESAHRTANFPFAEGNPFTATLWVGSEGFHMTVNGRHETSFAYREKLEPWLVSTVKVAGSLSLLSVLAKGLPVTEDNDIVVDVEKLKAPSIPGKRLVLLIGVFSTGNNFERRMALRRSWMQYEAVRSGEVAVRFFIGLHKNNRVNFELWSEAQAYGDIQLMPFVDYYSLISLKTIAICIMGTKIIPSKYIMKTDDDAFVRIDEVLSSLKGKPSEGLLYGLISSKSSPQRDQGSKWYISEKEWPHDTYPPWAHGPGYVISRDIAKFIVHGHQERKLQLFKLEDVAMGIWIEQFKNGGKEVHYENDERFYNAGCESNYVLAHYQSPRMVLCLWEKLQKEHKPECCE* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05017 652 Pfam Galactosyltransferase 418 600 IPR002659 GO:0006486|GO:0016020|GO:0016758
Rops2g05017 652 SUPERFAMILY Concanavalin A-like lectins/glucanases 185 377 IPR013320 -
Rops2g05017 652 Gene3D - 402 634 - -
Rops2g05017 652 CDD GLECT 185 374 IPR001079 GO:0030246
Rops2g05017 652 FunFam Beta-1,3-galactosyltransferase GALT1 398 625 - -
Rops2g05017 652 Pfam Galactoside-binding lectin 185 375 IPR001079 GO:0030246
Rops2g05017 652 Gene3D - 181 376 - -
Rops2g05017 652 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 343 604 IPR002659 GO:0006486|GO:0016020|GO:0016758
Rops2g05017 652 SMART Gal_bind_lectin_2 188 376 IPR001079 GO:0030246
Rops2g05017 652 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 184 377 IPR001079 GO:0030246
Rops2g05017 652 MobiDBLite consensus disorder prediction 293 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05017 Rops-Chr2 90002162 90008767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05017 11 652 Glycosyltransferase AT3G06440 53.178 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05017 K20843 - gmx:100816729 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05017 2 90002162 90008767 Rops2g05017 2 90002162 90008767 ECH
Rops2g05017 2 90002162 90008767 Rops1g00978 1 23279848 23284488 PCT