Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00978 ATGAAGAGGGGTAAACTAGACCCTTTTGCTATACCCAACAAGCTCACACTACTTCAAATTTTCATGGTGGTGATGCTTCTCTACATGCTCTTCATGAGCTTTGAAATCCCTCTTGCTTTCAGAGCTGGGTTTGGTTCTGAAAATGGTGCTTTTGGGTCTCTCACCGACGCATTACCCGTTCCTGTTCCACTGTTTGTAGAAGAACAACACGAAATTCAAGCCTTTGTTGCACCCAGAGGGTCACCGTTGCAGAAAGTTTCAACCTTGAACTTCAATGGAAGCTTCTCAAGTGTCTCTGAACTTCACAAGGTAGCAAGGCACGCTTGGTTAGCAGGGAAGAAGCTCTGGAGTGAAGTGGAAAGTGAAAAAGTTGAGAATTTTGTGAAGTTGAAGCCTGAAAATGGTTCATCTTCTTGCCCACATTCGGTTTCAATTTCCGGGTTTGAGTTTAGGGAGAAGTTCAAGGGTGTGATGGTGCTTCCTTGTGGTTTGACCCTTTGGTCTCACGTGACAGTTGTAGGGACCCCACGTTGGGCTCATGCTGAACGTGACCCCAATATTGCAGTGGTGAAAGATGGGGATGAAGCTGTGATGGTGTCACAGTTCATGATGGAGTTGCAGGGGTTGAAGGCTGTGGACAAGGAAGAACCACCTAGGATACTGCATTTTAATCCGAGGATTAAAGGGGATTGGAGTGGGAAGCCAGTGATTGAGCAAAACACTTGTTATAGGATGCAATGGGGTACTGCACTTAGGTGTGACGGATGGAAGTCACGTGCTGATGAGGAAACTGTTGATGGACACGTGAAATGTGAAAAGTGGATTCGGGATGATGATAATCGTTCTGAAGAGTGGAAGGCTACATGGTGGTTAAATAGACTAATAGGGCGAAAGAAGAAGGTGCTTATAGACTGGCCATACCCTTTTGCAGAGGGGAAATTATTTGTTCTCACCATAAGTGCTGGCTTGGAAGGTTACCATGTTAGTGTGGATGGGAGGCATGTGACATCCTTTCCCTATCGCACAGGCTTTGCTCTTGAGGATGCTACTGGACTATCCATAAATGGGGATGTTGATGTGCACTCTATATTTGCTGCTTCCTTACCTACATCACATCCTAGCTTTGCTCCACAGATGCATCTTGAATTGCTTCCTCAGTGGAAAGCTCCTCCTCTTCTCAATATAAATGTGGAGCTTTTCATTGGCATCCTTTCTGCTGGCAATCATTTTGCTGAACGCATGGCAGTGAGGAAGTCCTGGATGCAACATAAGCTAATCAAATCTTCACATGTCTTGGCTCGGTTTTTTGTAGCCTTGCATGCAAGGAAGGATATAAATGTGGACATAAAGAAAGAAGCAGAGTATTTCGGTGATATTGTTATAGTCCCATATATGGACCATTATGACCTTGTTGTGTTGAAGACCATAGCTATCTGTGAATATGGGATTCGCAATGTGGTTGCTAAGTATATCATGAAGTGTGATGATGACACCTTTGTCAGATTGGATTCTATCATGAGTGAAGCAAGGCAAGTTCAAAGTGATAGAAGTCTTTACATGGGAAATATGAATTACCACCACAGGCCTCTTCGCCATGGGAAATGGGCTGTAACTTATGAGGAATGGTTGGAGGAAGAGTATCCTACCTATGCTAATGGTCCAGGTTACATAGTGTCATCTGACATTGCTCAGTTCATTGTATCTGAATTTGAGAAGCACAGATTAAAATTATTTAAAATGGAGGATGTGAGCATGGGAATGTGGGTGGAGCAGTTCAACAGCTCAAAACCAGTAGAGTATGTGCACAGCTTAAAGTTTTGCCAATTTGGGTGTATTGAAGATTACTACACCGCACATTACCAATCTCCACGACAAATGACCTGCATGTGGGATAAATTGCAGCATCAAGTAAAACCACTCTGTTGCAACATGAGATGA 1938 0.437 MKRGKLDPFAIPNKLTLLQIFMVVMLLYMLFMSFEIPLAFRAGFGSENGAFGSLTDALPVPVPLFVEEQHEIQAFVAPRGSPLQKVSTLNFNGSFSSVSELHKVARHAWLAGKKLWSEVESEKVENFVKLKPENGSSSCPHSVSISGFEFREKFKGVMVLPCGLTLWSHVTVVGTPRWAHAERDPNIAVVKDGDEAVMVSQFMMELQGLKAVDKEEPPRILHFNPRIKGDWSGKPVIEQNTCYRMQWGTALRCDGWKSRADEETVDGHVKCEKWIRDDDNRSEEWKATWWLNRLIGRKKKVLIDWPYPFAEGKLFVLTISAGLEGYHVSVDGRHVTSFPYRTGFALEDATGLSINGDVDVHSIFAASLPTSHPSFAPQMHLELLPQWKAPPLLNINVELFIGILSAGNHFAERMAVRKSWMQHKLIKSSHVLARFFVALHARKDINVDIKKEAEYFGDIVIVPYMDHYDLVVLKTIAICEYGIRNVVAKYIMKCDDDTFVRLDSIMSEARQVQSDRSLYMGNMNYHHRPLRHGKWAVTYEEWLEEEYPTYANGPGYIVSSDIAQFIVSEFEKHRLKLFKMEDVSMGMWVEQFNSSKPVEYVHSLKFCQFGCIEDYYTAHYQSPRQMTCMWDKLQHQVKPLCCNMR* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00978 645 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 156 366 IPR001079 GO:0030246
Rops1g00978 645 FunFam Hydroxyproline O-galactosyltransferase 390 633 - -
Rops1g00978 645 SMART Gal_bind_lectin_2 160 365 IPR001079 GO:0030246
Rops1g00978 645 Gene3D - 393 639 - -
Rops1g00978 645 FunFam Hydroxyproline O-galactosyltransferase GALT4 155 273 - -
Rops1g00978 645 Gene3D - 150 364 - -
Rops1g00978 645 SUPERFAMILY Concanavalin A-like lectins/glucanases 158 364 IPR013320 -
Rops1g00978 645 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 333 594 IPR002659 GO:0006486|GO:0016020|GO:0016758
Rops1g00978 645 FunFam Hydroxyproline O-galactosyltransferase GALT2 280 364 - -
Rops1g00978 645 Pfam Galactosyltransferase 412 592 IPR002659 GO:0006486|GO:0016020|GO:0016758
Rops1g00978 645 CDD GLECT 160 364 IPR001079 GO:0030246
Rops1g00978 645 Pfam Galactoside-binding lectin 157 364 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00978 Rops-Chr1 23279848 23284488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00978 2 645 Glycosyltransferase AT1G74800 60.831 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00978 K20843 - gmx:100803219 1154.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00978 1 23279848 23284488 Rops1g00978 1 23279848 23284488 ECH
Rops2g05017 2 90002162 90008767 Rops1g00978 1 23279848 23284488 PCT