Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05012 ATGGCTTCTCTGGCTTTGCAATTCAGCGGGTTGAGGTGTGCCCCATTTTCATCTTCTCACTTATCCAAACCCTTTTGGAGGCAAACCCAGAAGCGCGTTTTGGTTCCCATAGTGAACTCGGTGGCAATTGCTAATGCACAGAATAAAGAGAGGTTGAAGCTGAAGGAACTCTTTGATGAAGCCTATGAGAGGTGCCGAACTGCTCCTATGGAAGGTGTTTCCTTTACCCTTGAACAGTTCAGTGAAGCTCTTGAAAAGTATGACTTTGATTCTGAAGTTGGCACCAAGGTTAAAGGCACTGTGTTCAACACAGATGCAAATGGAGCACTTGTTGATATTACTGCAAAATCATCTGCATACTTGCCACTACAAGAGGCATGCCTCCGCAGAATCAAGCATGTAGAAGAAGCAGGCATAGTTCCTGGTTTGAGAGAGGAGTTTTTGATCATTGGTGAAAATGAAGCAGATGACAGCTTGATTTTGAGTTTAAGGTCTCTTCAGTATGATCTTGCATGGGAACGTTGTAGACAACTTCAAGCAGAAGATGCTGTTCTCAAGGGTAAGGTTGTTGGAGCAAACAGAGGTGGAGTGGTGGCTGAGGTGGAAGGCCTTAGAGGGTTTGTTCCATTCTCACAGATATCAACGAAAACAACTGGAGAAGAGCTTCTTGAGAAGGAGCTTCCTCTGAAATTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGCAACCGAAAGGCTATGGCTGATAGCCAGGCACAGCTAGGAATTGGATCAGTAGTTACTGGAACTGTTCAAAGCCTAAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGCCTCCTTCATGTCAGTCAAATCAGCCATGACCGTGTATCTGATATTTCAACTGTTCTTCAACCTGGTGATACACTAAAGGTGATGATCTTAAGTCATGATAGGGAGAGAGGCCGGGTAAGTCTTTCCACAAAGAAGCTAGAACCCACACCTGGTGACATGATCCGCAATCCAAAGCTGGTATTTGAGAAGGCAGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCTGACATGCTCAGGTTCCAGCCTGAGAGTGGATTAACTCTCAATGGTGAGGGAATCTTGGGAACACTTAATTCGGACTTGCCTGAAGAGGGACTGGATCTGAGTGAGGTACCACCAGCTGAAGAATGA 1227 0.4564 MASLALQFSGLRCAPFSSSHLSKPFWRQTQKRVLVPIVNSVAIANAQNKERLKLKELFDEAYERCRTAPMEGVSFTLEQFSEALEKYDFDSEVGTKVKGTVFNTDANGALVDITAKSSAYLPLQEACLRRIKHVEEAGIVPGLREEFLIIGENEADDSLILSLRSLQYDLAWERCRQLQAEDAVLKGKVVGANRGGVVAEVEGLRGFVPFSQISTKTTGEELLEKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNGEGILGTLNSDLPEEGLDLSEVPPAEE* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05012 408 ProSiteProfiles S1 domain profile. 259 327 IPR003029 GO:0003676
Rops2g05012 408 PANTHER 30S RIBOSOMAL PROTEIN S1 36 396 - -
Rops2g05012 408 Gene3D - 175 252 IPR012340 -
Rops2g05012 408 FunFam 30S ribosomal protein S1 255 334 - -
Rops2g05012 408 ProSiteProfiles S1 domain profile. 94 164 IPR003029 GO:0003676
Rops2g05012 408 Pfam S1 RNA binding domain 180 244 IPR003029 GO:0003676
Rops2g05012 408 Pfam S1 RNA binding domain 258 327 IPR003029 GO:0003676
Rops2g05012 408 SUPERFAMILY Nucleic acid-binding proteins 258 337 IPR012340 -
Rops2g05012 408 CDD S1_RPS1_repeat_hs4 259 327 - -
Rops2g05012 408 Gene3D - 253 331 IPR012340 -
Rops2g05012 408 FunFam 30S ribosomal protein S1 78 175 - -
Rops2g05012 408 Gene3D - 76 174 IPR012340 -
Rops2g05012 408 FunFam 30S ribosomal protein S1, chloroplastic 176 252 - -
Rops2g05012 408 ProSiteProfiles S1 domain profile. 182 246 IPR003029 GO:0003676
Rops2g05012 408 SUPERFAMILY Nucleic acid-binding proteins 84 190 IPR012340 -
Rops2g05012 408 MobiDBLite consensus disorder prediction 388 408 - -
Rops2g05012 408 SUPERFAMILY Nucleic acid-binding proteins 177 250 IPR012340 -
Rops2g05012 408 Coils Coil 344 364 - -
Rops2g05012 408 SMART S1_6 180 246 IPR022967 -
Rops2g05012 408 SMART S1_6 257 327 IPR022967 -
Rops2g05012 408 SMART S1_6 92 164 IPR022967 -
Rops2g05012 408 CDD S1_RPS1_repeat_ec2_hs2 182 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05012 Rops-Chr2 89972748 89975640 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05012 K02945 - vvi:100265325 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05012 2 89972748 89975640 Rops2g05012 2 89972748 89975640 ECH
Rops2g05012 2 89972748 89975640 Rops11g01409 11 20837701 20840940 PCT