Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04967 ATGCATCGCATGGACAACGAGGGGATCCTCCCGTGTTCAAGGAATGTTCCCGAGTCTGAAGCAATGTTATTAAACTCAACTCGGACCGCTAGACCTCTACCGGGTTCGAGTCTTTCAATGGATCAGATGTGTCTTCGAACTGGTGTGAACCGGTTTCACTCGGTTGGTTTTCATGAAAACTGATCGCCGTTTCTCCGCTGTTCATTCCGATCCCCTCTCATTGTATCTATCTGTTTCCTTGTCATGGCCACTGGACAACTATTCTCCCGTACTACACAAGCTCTGTTTTACAACTACAAGCAACTTCCCATCCAGCGGATGCTTGATTTTGACTTTCTTTGCGGTAGGGAAACACCATCAGTTGCTGGTATAATTAATCCTGGTTCTGAGGGATTTCAAAAGCTCTTTTTCGGTCAGGAGGAAATTGCCATCCCAGTTCATTCTGCCATTGAAGCAGCTTGTGCTGCCCATCCTACTGCTGATGTGTTCATCAATTTTGCATCATTTAGAAGTGCTGCAGCTTCATCCATGGCCGCTTTGAAGCAGCCAACGATTAGAGTTGTTGCTATTATTGCTGAAGGTGTGCCTGAGTCAGACACTAAGCAATTGATTGCATATGCTCGGGCAAACAATAAGGTTGTTATTGGCCCAGCCACCGTTGGAGGCATTCAAGCTGGTGCTTTTAAGATAGGTGACACAGCTGGAACCATTGACAATATAATTCTTTGCAAGCTCTACAGGCCTGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAACTATACAACACTATTGCCCGTGTAACTGACGGAATTTATGAAGGCATTGCCATTGGAGGAGATGTTTTCCCTGGTTCCACACTTTCGGACCATGTTTTGCGGTTTAACAACATACCACAGGTTAAAATGATGGTGGTACTTGGGGAACTTGGTGGGCGCGATGAGTATTCTCTAGTGGAAGCTCTAAAACAAGGGAAAGTGACTAAACCAGTTGTTGCCTGGGTTAGCGGAACCTGTGCACGACTCTTCAAATCTGAAGTACAATTTGGTCATGCTGGAGCTAAAAGTGGTGGTGAGATGGAGTCTGCTCAAGCAAAGAATCAGGCACTGAGAGAAGCTGGAGCTGCTGTTCCCACTTCATATGAAGCATTTGAAGCTGCAATAAAGGAAACATTTGACAAATTGGTTGAAGAAGAGAAGATCACACCAGTGAAGGAGTTTACTCCTCCACAAATCCCTGAGGACCTTAACACTGCAATTAAGAGTGGAAAAGTACGTGCTCCAACTCATATTATTTCCACCATCTCTGATGACAGAGGTGAGGAGCCTTGCTATGCTGGTGTACCCATGTCATCCATTATTGAAAAGGGTTATGGTGTGGGTGATGTTATCTCTCTTTTGTGGTTCAAACGCAGCCTTCCTCGCTACTGTACTCAATTTATTGAGATATGCATCATGCTGTGTGCTGACCATGGTCCTTGTGTCTCTGGTGCTCACAATGCTATTGTGACAGCAAGGGCTGGGAAGGACCTTGTCTCCAGTCTTGTATCGGGTTTGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGACGCTGCTCGCTATTTCAAGGATGCTTGTGACAGAAGTCTTACACCTTATGAATTTGTTGAAAGTATGAAGAAGAAAGGCATTCGTGTGCCAGGAATAGGGCACAGAATCAAGAATAGGGATAACAAAGATAAGAGAGTCGAGCTGCTACAGAAGTTTGCACGCACTCATTTTCCTTCTGTGAAATACATGGAATATGCTGTTGAAGTTGAAAACTACACCCTCACAAAGGCAAATAACGTAGTTCTAAACGTAGATGGTGCAATTGGGTCACTTTTCTTGGATCTTCTTGCTGGTAGTGGAATGTTCACCAAACAAGAGATTGACGAAATTGTGGAGATTGGGTATCTGAATGGCCTTTTTGTTCTGGCACGCTCCATTGGTCTGATTGGGCATACCTTCGACCAAAAGAGATTGAAACAACCACTCTACCGCCACCCATGGGAGGATGTTCTCTACACAAAGTGA 2070 0.4483 MHRMDNEGILPCSRNVPESEAMLLNSTRTARPLPGSSLSMDQMCLRTGVNRFHSVGFHEN*SPFLRCSFRSPLIVSICFLVMATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHSAIEAACAAHPTADVFINFASFRSAAASSMAALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTIDNIILCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALREAGAAVPTSYEAFEAAIKETFDKLVEEEKITPVKEFTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIIEKGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNAIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDACDRSLTPYEFVESMKKKGIRVPGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVEVENYTLTKANNVVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04967 688 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 248 273 IPR017866 -
Rops2g04967 688 Gene3D - 530 627 IPR016143 -
Rops2g04967 688 PANTHER ATP-CITRATE SYNTHASE 83 687 IPR002020 GO:0006099|GO:0046912
Rops2g04967 688 FunFam ATP-citrate synthase beta chain protein 82 217 - -
Rops2g04967 688 SUPERFAMILY Citrate synthase 214 686 IPR036969 GO:0046912
Rops2g04967 688 CDD CCL_ACL-C 449 686 - -
Rops2g04967 688 Gene3D - 218 403 IPR016102 -
Rops2g04967 688 Coils Coil 682 688 - -
Rops2g04967 688 FunFam ATP-citrate synthase subunit 218 403 - -
Rops2g04967 688 Pfam CoA-ligase 253 377 IPR005811 GO:0003824
Rops2g04967 688 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 254 283 IPR033847 -
Rops2g04967 688 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 339 355 IPR017440 -
Rops2g04967 688 Gene3D - 82 217 - -
Rops2g04967 688 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 88 216 IPR036291 -
Rops2g04967 688 FunFam ATP-citrate synthase subunit 1 535 628 - -
Rops2g04967 688 Pfam Citrate synthase, C-terminal domain 479 678 IPR002020 GO:0006099|GO:0046912
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04967 Rops-Chr2 89283066 89295914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04967 81 688 Acyl Lipid Metabolism Gene Families AT3G06650 93.586 0.0 1149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04967 K01648 - gmx:100795745 1154.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04967 2 89283066 89295914 Rops2g04967 2 89283066 89295914 ECH
Rops2g04967 2 89283066 89295914 Rops11g01455 11 21756916 21784949 PCT