Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01455 ATGGCCACTGGACAACTATTCTCTAGTACTACACAAGCTCTGTTTTACAATTACAAGCAACTTCCCATCCAGCACATGCTTGATTTTGACTTCCTTTGTGGAAGAGAAACACCATCAGTTGCTGGAATAATTAACCCTGGTGGTTCTGAGGGATTTCAAAAACTCTTTTTTGGTCAGCAAGAAATTGCCATCCCAGTTCATGCTACCATTGAAGCAGCTTGTGCTGCACATCCTATTGCTGATGTCTTCATCAATTATGCATCATTTAGAAGTGCTGCTGAATCATCCATAGCTGCTTTGAAGCAGCCAACAATTAGAGTTGTTGCTATTATTGCTGAAGGAGTAACCGCGTCAGACACAAAGCAATTGATTGCATATGCCAGGGCAAACAATAAGGTTGTTATTGGCCCGGGCTCTGTTGGAGGCATTCAAGCTGGGGCTTTTAAAATTGGTGACACAGCTGGAACAATTGACAATATAATTCAATGCAAGCTCTACAGGCCCGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAATTATACAATACCATTGGCCGTGTAACTGATGGAATTTATGAAGGCATTGCCATTGGAGGATATGTTTGCCCAGGTTCCACACTTTCTGACCACGTTTTACGGTTTAACAACATACCACAGGTTAAAATGATCGTAGTACTTGGAGAACTTGGTGGGCGTGATGAGTATTCCTTAGTGGAAGCCTTAAAACAAGGAAAAGTGACAAAACCAGTAGTAGCCTGGGTAGATAAAAGTGGTGGTGATTTGGAGTCTGTTCAAGCAAAGAATCAGGCACTAAGGGAAGCTGGAGCTGTTGTTCCTACTTCTTATGAAGCTCTTGAAGCTGCTATTAAAGAAACATTTGACAAATTGAACGAAGAAGGGAAGATCACACCAGTAACGGAAATTACTCCTCCATCAATCCCTGAGGACCTTAACTCTGCAATTAAGAGTGGAAAAGTCAGAGTTCCAACTCATATTATTTGCACCATTATTGATGAAAGAGGTGAGGAGCCATTGTATGCTGGTGTACCCTTATCTTCCATTATTGAAAAGGGTTATGGTATTGGTGATGTTATCTCTCTTTTGTGGTTTAAACGCAGCCTTCCCCGTTACTGTACTCAATTTATTGAGATATGCATCATGTTATGTGCAGACCATGGTCCTTGTGCCTCTGGTGCTCACAATGCTATTGTGACAGCAAGGGCTGGGATGGACCTAATTTCAAGTCTTGTATCAGGTTTGCTCACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTACTTTAAGGATGCTCATGACCGGGGGCTTACACCTTTTGAGTTTGTTGAAGGTATGAAGAGGAAAGGAATTCGAGTGCCTGGAATTGGGCACAGAGTCAAGAATAAGGACAACAAAGATAAGAGAGTTGGGATGCTACAGCAGTTTGCACGCACACATTTTCCTTCAATGAAATACATGGAATATGCTGTTCAAGTTGAAAACTACACCCTCACAAAGGCAAATAATTTAATTCTTAATATAGATGGTGCAATTGCATCTCTTTTCTTGGATCTTCTTGCTGGTTGTGGAATGTTCACCGAGCAAGAGATTGATGAAATTGTGGAGATTGGTTATCTGAATGGACTCTTTGTGCTGGCACGTTCCATTGGTCTCATTGGGCATACCTTTGACCAAAAGAGATTGAAGCAACCACTCTACAGCCACCCATGGGAGGATGTTCTCTACACAAAGCGAGAGGTTTTTAGACAAGTGTTGTATGATCTATTGTTGAAAAGTCATATTCCATCAATTAATTCTCTAGATGAAGATTCTGATGTCTGTTATGTTGTGGCTTCAAAAGGAAATGATCTCCAAGTTCATGCACATTTGTTCTGCGAGTCAATCAGATCTATCTGTTTCTTCATCATGGCCACTGGACAACTATTCTCCCGTAATACACAAGCTTTGTTTTACAACTACAAGCAACTTCCCATCCAGCGGATGCTTGATTTTGACTTCCTTTGTGGCAGAGAAACACCATCAGTTGCTGGAATAATTAACCCTGGTTCTGAGGGATTTCAAAAACTCTTTTTTGGTCAGGAGGAAATTGCCATCCCAGTTCATGCTACCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAATTTTGCATCATTTAGAAGTGCCGCTGCATCATCCATAGCTGCTTTGAAGCAGCCAACAATTAGAGTTGTTGCTATTATTGCCGAAGGAGTACCTGAGTCAGACACTAAGCAATTGATTGCATATGCCCGGGCAAACAATAAGGTTGTTATTGGCCCAGCTACTGTTGGAGGCATTCAAGCTGGGGCTTTTAAAATTGGTGACACAGCTGGAACAATTGACAATATAATCCACTCCAAGCTCTACAGGCCCGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAATTATACAACACCATTGCCCGTGTAACTGATGGGATTTATGAAGGCATTGCCATTGGAGGAGATGTTTTCCCTGGTTCCACACTTTCTGACCATGTTTTACGGTTTAACAACATACCACAGGTTAAAATGGTGGTAGTACTTGGAGAACTTGGTGGGCGCGATGAGTATTCCTTAGTGGAAGCCCTAAAACAAGGGAAAGTGACAAAACCAGTTGTTGCCTGGGTTAGTGGAACCTGTGCACGACTTTTCAAATCTGAAGTGCAATTTGGTCATGCTGGAGCTAAAAGTGGTGGTGAATTGGAGTCTGCTCAAGCAAAGAATCAAGCACTAAGGGAAGCTGGAGCTGTTGTTCCTACTTCGTATGAAGCTTTTGAAGTTGCTATTAAAGAAACATTTGACAAATTGGTTGAAGAAGGGAAGATCACACCAGTGAAGGAAATTACTCCTCCACAAATCCCTGAGGACCTTAACTCTGCAATTAAGAGTGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATTTCTGATGATAGAGGCGAGGAGCCATGCTATGCTGGTGTACCCATGTCTTCCATTATTGAAAAGGGTTATGGTGTCGGTGATGTTATCTCTCTTTTGTGGTTTAAACGCAGCCTTCCCCGTTATTGTACTCAGTTTATTGAGATATGCATCATGTTATGTGCCGACCACGGTCCTTGTGTCTCTGGTGCTCACAATACTATTGTGACAGCAAGGGCAGGGAAGGACCTAGTTTCCAGTCTTGTGTCAGGTTTGCTTACAATCGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGGTACTTCAAGGATGCTCATGACAGGGGGCTTACACCTTATGAGTTTGTTGAAAGCATGAAGAAGAAGGGAATTCGTGTGCCAGGAATAGGGCACAGGATCAAGAACAGGGACAACAAAGATAAGAGAGTTGAACTGCTACAGAAGTTTGCTCGCACACATTTTCCTTCTGTGAAGTACATGGAATATGCTGTTCAAGTTGAAACCTACACCCTCACGAAGGCAAATAATTTAGTTCTTAATGTAGATGGTGCAATTGGATCTCTTTTCTTGGATCTTCTTGCTGGTAGTGGAATGTTCACCAAGCAAGAGATTGATGAAATTGTGGAGATTGGCTATCTGAATGGGCTCTTTGTGCTGGCACGCTCCATTGGTCTGATTGGGCATACCTTTGACCAAAAGAGATTGAAGCAACCGCTCTACCGCCACCCATGGGAGGATGTTCTCTACACAAAGTGA 3774 0.4271 MATGQLFSSTTQALFYNYKQLPIQHMLDFDFLCGRETPSVAGIINPGGSEGFQKLFFGQQEIAIPVHATIEAACAAHPIADVFINYASFRSAAESSIAALKQPTIRVVAIIAEGVTASDTKQLIAYARANNKVVIGPGSVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNTIGRVTDGIYEGIAIGGYVCPGSTLSDHVLRFNNIPQVKMIVVLGELGGRDEYSLVEALKQGKVTKPVVAWVDKSGGDLESVQAKNQALREAGAVVPTSYEALEAAIKETFDKLNEEGKITPVTEITPPSIPEDLNSAIKSGKVRVPTHIICTIIDERGEEPLYAGVPLSSIIEKGYGIGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCASGAHNAIVTARAGMDLISSLVSGLLTIGPRFGGAIDDAARYFKDAHDRGLTPFEFVEGMKRKGIRVPGIGHRVKNKDNKDKRVGMLQQFARTHFPSMKYMEYAVQVENYTLTKANNLILNIDGAIASLFLDLLAGCGMFTEQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYSHPWEDVLYTKREVFRQVLYDLLLKSHIPSINSLDEDSDVCYVVASKGNDLQVHAHLFCESIRSICFFIMATGQLFSRNTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHATIEAACAAHPTADVFINFASFRSAAASSIAALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHSKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMVVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGELESAQAKNQALREAGAVVPTSYEAFEVAIKETFDKLVEEGKITPVKEITPPQIPEDLNSAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIIEKGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAHDRGLTPYEFVESMKKKGIRVPGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVQVETYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK* 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01455 1257 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 823 852 IPR033847 -
Rops11g01455 1257 CDD CCL_ACL-C 1018 1255 - -
Rops11g01455 1257 Pfam Citrate synthase, C-terminal domain 1048 1247 IPR002020 GO:0006099|GO:0046912
Rops11g01455 1257 Pfam Citrate synthase, C-terminal domain 382 573 IPR002020 GO:0006099|GO:0046912
Rops11g01455 1257 Gene3D Citrate Synthase, domain 1 1049 1247 IPR016142 -
Rops11g01455 1257 SUPERFAMILY Citrate synthase 779 1253 IPR036969 GO:0046912
Rops11g01455 1257 Gene3D - 651 786 - -
Rops11g01455 1257 Gene3D - 2 138 - -
Rops11g01455 1257 Gene3D Citrate Synthase, domain 1 383 570 IPR016142 -
Rops11g01455 1257 CDD CCL_ACL-C 352 589 - -
Rops11g01455 1257 Pfam CoA-ligase 175 292 IPR005811 GO:0003824
Rops11g01455 1257 Pfam CoA-ligase 822 947 IPR005811 GO:0003824
Rops11g01455 1257 SUPERFAMILY Citrate synthase 180 594 IPR036969 GO:0046912
Rops11g01455 1257 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 656 785 IPR036291 -
Rops11g01455 1257 Gene3D - 433 542 IPR016143 -
Rops11g01455 1257 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 817 842 IPR017866 -
Rops11g01455 1257 PANTHER ATP-CITRATE SYNTHASE 653 1256 IPR002020 GO:0006099|GO:0046912
Rops11g01455 1257 FunFam ATP-citrate synthase subunit 787 972 - -
Rops11g01455 1257 FunFam ATP-citrate synthase subunit 1 1104 1197 - -
Rops11g01455 1257 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 908 924 IPR017440 -
Rops11g01455 1257 FunFam ATP-citrate synthase beta chain protein 651 786 - -
Rops11g01455 1257 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 137 IPR036291 -
Rops11g01455 1257 Gene3D - 139 306 IPR016102 -
Rops11g01455 1257 Gene3D - 787 972 IPR016102 -
Rops11g01455 1257 FunFam ATP-citrate synthase beta chain protein 2 138 - -
Rops11g01455 1257 Gene3D - 1100 1201 IPR016143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01455 Rops-Chr11 21756916 21784949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01455 1 591 Acyl Lipid Metabolism Gene Families AT3G06650 84.072 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01455 K01648 - gmx:100800904 1165.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01455 11 21756916 21784949 Rops11g01455 11 21756916 21784949 ECH
Rops2g04967 2 89283066 89295914 Rops11g01455 11 21756916 21784949 PCT