Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04916 ATGCTAAGGCAACGGAAGTTGCTGACAATGGTGGCATTGCTCTTGCTGCTGGCGTTGAGCAATGAAGTGAGAGTGAATGGTGATGGTGGTGGTAGGCAATGTGAATTTAATTTGGCACCAAACCCAAGACCACACAGTGTCTCCATTTTGGAGTTTGGTGCGGTTGGTGATGGCAAAACATTAAACACTATTGCATTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGCTTTATGTACCACCGGGAACATGGTTGACTCAAAGTTTCAATCTTACTAGCCATCTAACCCTTTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATTTCACTGGGAAGTTGTTGATCCCTTACCTTCTTATGGCCGGGGAATTGAAGTTCCTGGGGGAAGATATCAGAGCTTGATAAATGGATACATGCTAGATGATGTGGTCATAACAGCATCTAATAATGTGGTAGTTTCAAATCTAACATTCTTGAATTCCCCTGCATATAGCATCCACCCAGTTTATTGCAGCAATGTACATATTCATAATATTTCAATCTTTGCTCCTCCAGAATCCCCTTATACTGTTGGCATAGTACCAGATTCTTCTGATCATATTTGTATAGAGGATTGCACCATTGCCACAGGCTATGATGCAATTGCCCTCAAAAGTGGCTGGGATGAGTATGGCATTGCCTATAGCAGGCCCACAGAGAATGTACACATAAGAAGGGTGCATCTGCAAGCTTCTTCTGGCTCTGCTCTTGCATTTGGCAGTGACATGTCTGGTGGCATTTCGAATGTTCTTACGGAGCATGTTTATCTCCACAACTCAAATGGTGGCATTGAGTTCAAAACCACCAGGGGTAGAGGTGGTTATATGAAGGAAATCATGATATCAGACATAGAAATGAAGAATATATTCACAGCAATCTCAGCCACAGGTCATTGTGGGTCTCATCCTGATGACAAATTTGATCCTAATGCTCTCCCACTTTTGGATCACTTTATTTTGCAAGATATGATTGGCACAAACATCACTATTGCTGGAAGCTTTGCTGGACTACAAGAATCTCCCTTCACTAACATATGCCTTTCCAACATAACCTTGTCTATAAATCCTGTTTCTTCCATTACTTGGGAATGCTCAAATGTTTCTGGATTTTCAGATTCTGTTCTCCCCAAACCCTGTCCTGATCTTGACACCCCTTCAGATTACTCCTCATTCTGTCTCTCCCTGCTGAGTACAAATGGAAAAAGTGCAGTCCTGTGA 1287 0.4242 MLRQRKLLTMVALLLLLALSNEVRVNGDGGGRQCEFNLAPNPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGAVIIGSQDPFHWEVVDPLPSYGRGIEVPGGRYQSLINGYMLDDVVITASNNVVVSNLTFLNSPAYSIHPVYCSNVHIHNISIFAPPESPYTVGIVPDSSDHICIEDCTIATGYDAIALKSGWDEYGIAYSRPTENVHIRRVHLQASSGSALAFGSDMSGGISNVLTEHVYLHNSNGGIEFKTTRGRGGYMKEIMISDIEMKNIFTAISATGHCGSHPDDKFDPNALPLLDHFILQDMIGTNITIAGSFAGLQESPFTNICLSNITLSINPVSSITWECSNVSGFSDSVLPKPCPDLDTPSDYSSFCLSLLSTNGKSAVL* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04916 428 Gene3D - 35 396 IPR012334 -
Rops2g04916 428 PANTHER PECTIN LYASE-RELATED 156 407 - -
Rops2g04916 428 SMART pbh1 181 207 IPR006626 -
Rops2g04916 428 SMART pbh1 270 291 IPR006626 -
Rops2g04916 428 SMART pbh1 242 264 IPR006626 -
Rops2g04916 428 SMART pbh1 158 180 IPR006626 -
Rops2g04916 428 SMART pbh1 208 229 IPR006626 -
Rops2g04916 428 Pfam Glycosyl hydrolases family 28 153 391 IPR000743 GO:0004650|GO:0005975
Rops2g04916 428 SUPERFAMILY Pectin lyase-like 38 406 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04916 Rops-Chr2 88575261 88578014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04916 8 410 Glycoside Hydrolase AT3G06770 58.182 3.96e-178 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04916 - - gmx:100802343 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04916 2 88575261 88578014 Rops2g04916 2 88575261 88578014 ECH
Rops2g04916 2 88575261 88578014 Rops11g01514 11 22742252 22745344 PCT