Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01514 ATGCTTGTGGCATTGCTCTTGCTGCTGGCATTGAGCAATGCCGTGAGAGTTTATGGAGTTGGTGAGCAATGTGGTTTGAATCCAAAACTAGATCCAAGACCACACAGTGTCTCCATTTTGGAGTTTGGTGCAGTTGGAGATGGTAAAACACTGAATACGATCGCATTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGCTGTATGTGCCACCTGGAAAATGGCTCACTGGAAGTTTCAATCTTACCAGCCATCTCACTCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCATTGGGAAGTTGTTGAGCCCTTACCTTCTTATGGCCGAGGGCTTGAAGTTCCTGGGGGAAGATATCAGAGCTTGATAAATGGATACATGTTAAAAGATGTGGTCATAACAGCATCTGATTATGTGGTCGTTTCAAATCTTACAATCTTGAATGCCCCAGCATTTAGCATCCACCCAGTTTATTGCAGCAATGTACATATTCAAAATATTTCAATCTCCACTCCTCCAGAATCCCCTTATACTGTTGGTATAGTACCAGATTCTTCTGATAATGTTTGTATAGAAGATTGTATCATTGCCATGGGATTTGATGCAATTTCTCTCAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCTACTGAGAATGTACACATCAGAAGGGTGCATCTTAATGCATTTTCCGGCTCTGCTATTGCATTTGGCAGTTACATGTCTGGTGGCATTTCAAATGTTCAAGTGGAGCATGTTCATCTTTTCAACTCAAATAGTGGCATTGAGTTCAGAACTGCCAAAGGCAGAGGTGGTTATATGAAAGAAATTGTTATATCAGACATACAAATGGAGAACATCTACACAGCAATTGCTGCCACAGGTCATTGTGAGTCTCATCCTGATGACAAATTTGATCCAAATGCTCTCCCTATTTTGGATCACATTACCTTGAAGGATGTTACTGGCACAAATATTACCATTGCTGGAAGCTTTGCTGGAATAGAGGAATCCCCCTTCACTAACATATGCCTTTCCAATATAACCTTGTCTACAAATTCTGTTTCACCCTTTACATGGGAATGCTCAAATGTCTCTGGATTTTCAGAATCTGTGATCCCTCAACCTTGTCCACAACTTGGGAACCCCTCAAATTCTTCCTCATCATGTTTCGACCTGCTGAGTATCAGTGGAAAAACTGCAGAGCTTTGA 1257 0.4193 MLVALLLLLALSNAVRVYGVGEQCGLNPKLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWEVVEPLPSYGRGLEVPGGRYQSLINGYMLKDVVITASDYVVVSNLTILNAPAFSIHPVYCSNVHIQNISISTPPESPYTVGIVPDSSDNVCIEDCIIAMGFDAISLKSGWDEYGIAYGRPTENVHIRRVHLNAFSGSAIAFGSYMSGGISNVQVEHVHLFNSNSGIEFRTAKGRGGYMKEIVISDIQMENIYTAIAATGHCESHPDDKFDPNALPILDHITLKDVTGTNITIAGSFAGIEESPFTNICLSNITLSTNSVSPFTWECSNVSGFSESVIPQPCPQLGNPSNSSSSCFDLLSISGKTAEL* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01514 418 SMART pbh1 148 170 IPR006626 -
Rops11g01514 418 SMART pbh1 198 219 IPR006626 -
Rops11g01514 418 SMART pbh1 232 254 IPR006626 -
Rops11g01514 418 SMART pbh1 171 197 IPR006626 -
Rops11g01514 418 SMART pbh1 260 281 IPR006626 -
Rops11g01514 418 SMART pbh1 289 310 IPR006626 -
Rops11g01514 418 PANTHER PECTIN LYASE-RELATED 148 402 - -
Rops11g01514 418 Pfam Glycosyl hydrolases family 28 143 381 IPR000743 GO:0004650|GO:0005975
Rops11g01514 418 Gene3D - 28 148 IPR012334 -
Rops11g01514 418 Gene3D - 149 386 IPR012334 -
Rops11g01514 418 SUPERFAMILY Pectin lyase-like 32 395 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01514 Rops-Chr11 22742252 22745344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01514 1 406 Glycoside Hydrolase AT3G16850 58.503 2.12e-180 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01514 - - gmx:100777503 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01514 11 22742252 22745344 Rops11g01514 11 22742252 22745344 ECH
Rops2g04916 2 88575261 88578014 Rops11g01514 11 22742252 22745344 PCT