Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04896 ATGCTTGCGGAGGAGAAATCACAAAAAACATACCCGACAATTGCTGAGCTATTGGACGAACTAAAGAGAATGACAGACATAGGGTTCCCAATTGTAGCCATGAGCCTTGTGAACTACCTCAAAAACATGACCTTAGTTATGTGCATGGGAAGGTTGGGAAGCCTAGAGTTAGCTGGTGGTGCTTTGGCCGTAGGCTTCACTAACATCACTGGTTACTCTGTCCTTTCAGGTCTAGCCATGGGCATGGAACCCCTTTGTAGCCAGGCCTTTGGTTCAAGAAACTTCTCTTTAGTCTCTCTCACATTGCAAAGGACAATTTTCATGTTACTGCTATTTTCTCTACCCATTTGTCTTTTATGGCTCAACCTTGAATCTTTCATGCTTTGCCTTCATCAGAACCGAGACATAACCCGAGTAGCAAGCCTCTATTGTCGCTTCTCCATCCCTGACCTCATTGCCAATAGCTTCCTTCACCCTCTCCGTATCAATTTACGTAGTAAAGGCACAACTTGGCCACTAATGTGGTGCACTTTACTAGCCATTCTTCTACATGTTCCCATCATCACTTTTTTGACCTTCAAACTTCACCTTGGTGTACCCGGCATTGCTATTTCATCTTTTATTGCCAATTTTAACACCCTTTTCTTCCTTCTCTTATACATGTTCTATACACGTGCCCCCCAGGAGTCTCTTTCTATGCCATTAATAATATCTCATCCCATGTCACATAACTTAACAAACGGTGCTATTAGTAAAGAATGCGGTATACTAAAGCTAATGAAATTTTCCATTCAAAGTTGTGTAGCTGTTTGCTTGGAATGGTGGTGGTACGAGTTCATGACAATTTTAGCAGGTTACCTTTATAACCCTCGTGTTGCTCTAGCCACAGCAGGCATAGTGATACAAACAACTTCTCTTTTGTACACTTTGCCGACAGCACTAAGTGCATCAGTGTCTACAAGAGTGGGAAACGAACTTGGAGCTGGTCAACCTGAAAGGGCAAGATTGTCAACAGTGGTAGCCATAGGATTATCACTTGGAAGCTCAATTTTTGGGTTGTTATGGACCACGGTTGGGAGAGAAAGATGGGGGAGAGTGTTCACTAGTGACAATGAGGTGTTGGAATTGACCATGGTTGTGTTACCAATAATTGGATTGTGTGAGTTGGCAAATTGTCCACAAACTACAAGCTGTGGAATACTTAGAGGAAGTGCTAGGCCTGGTGTTGGGGCTTTGATAAACTTTTGCTCTTTTTACTTGGTGGGAGCACCAGTGGCCATAGTTTTAGCCTTTGTTTGGAAACTAGGGATGGTGGGTCTTTGTTATGGGTTGCTGACAGCACAAATTGCATGTGTGGTGTCAATCTTAGTTGTGGTATACAAGACTGATTGGGAAAGGGAGTCATTGAAAGCCAAAAGCTTGGTGGGAAAGAGTTCATGTGACACGTTATTTGCACGTGCAGACCAAACAGTCAAATGCGATGAAGGTATTGTCTTTCTCAAAGAGAACAACTCCGAAAACTGA 1524 0.4304 MLAEEKSQKTYPTIAELLDELKRMTDIGFPIVAMSLVNYLKNMTLVMCMGRLGSLELAGGALAVGFTNITGYSVLSGLAMGMEPLCSQAFGSRNFSLVSLTLQRTIFMLLLFSLPICLLWLNLESFMLCLHQNRDITRVASLYCRFSIPDLIANSFLHPLRINLRSKGTTWPLMWCTLLAILLHVPIITFLTFKLHLGVPGIAISSFIANFNTLFFLLLYMFYTRAPQESLSMPLIISHPMSHNLTNGAISKECGILKLMKFSIQSCVAVCLEWWWYEFMTILAGYLYNPRVALATAGIVIQTTSLLYTLPTALSASVSTRVGNELGAGQPERARLSTVVAIGLSLGSSIFGLLWTTVGRERWGRVFTSDNEVLELTMVVLPIIGLCELANCPQTTSCGILRGSARPGVGALINFCSFYLVGAPVAIVLAFVWKLGMVGLCYGLLTAQIACVVSILVVVYKTDWERESLKAKSLVGKSSCDTLFARADQTVKCDEGIVFLKENNSEN* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04896 507 Coils Coil 497 507 - -
Rops2g04896 507 PANTHER MULTIDRUG RESISTANCE PROTEIN 16 464 - -
Rops2g04896 507 NCBIfam MATE family efflux transporter 30 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Rops2g04896 507 CDD MATE_eukaryotic 20 470 IPR045069 GO:0042910|GO:1990961
Rops2g04896 507 Pfam MatE 266 427 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Rops2g04896 507 Pfam MatE 30 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04896 Rops-Chr2 88285636 88287601 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04896 K03327 - gmx:100801932 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04896 2 88285636 88287601 Rops2g04896 2 88285636 88287601 ECH
Rops2g04896 2 88285636 88287601 Rops11g01538 11 23397334 23398989 PCT