Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01538 ATGCTTGCCGAGGAGAAATCTCAAAAGACATACCCGACAACTGCTGAGGTAGTGGAGGAGCTTAAGAGAATGACAGGTATAGGTTTCCCAATAGCAGCCGTGGGGCTTGTGGGATATCTCAAAAACATGATCTTAGTTGTGTGCATGGGAAGGTTGGGAAGCTTGGAGTTAGCAAGTGGAGCTTTGGCTATAGGCTTCACCAACATAACAGGTTACTCAGTCCTTTCAGGTTTATCAATGGGCATGGAACCTCTTTGCACACAAGCCTTTGGTTCAAGAAACTTCTCCTTGGTCTCTCTCACATTAAGAAGGACAATTCTCATGTTATTGCTAGCTTCCTTGCCCATTTCTCTCTTGTGGCTCAACCTTGAACCTTTCATGCTCTGCCTTCATCAGAACCCTGACATAACTAGAGTGGCAAGCCTCTATTGCCGGTTCTCCATCCCTGACCTCATTGCCAATAGCTTTCTTCACCCAATTCGAATCTATTTACGTAGCAAAGGGATAACTTGGCCATTAATGTGGTGTACTTTACTTTCAATTCTCTTACACATCCCCATCATCTCTTTTTTTACCTTCAAACTTCACCTTGGTGTACCCGGGATTGCTATTTCAGCTTTTGTTGCCAATTTCAACACCCTTTTCTTCCTTCTATCTTACATGCTCTACATGCACATCACAAAGGTGTCACTCTCTATGCCATTATTAACATCTCTTCCATCATCACAACCTGAAAAATTAAATGCCACTTCTACCCTAGGCAAAGAATGGGGTTTGCTAATAAGGTTTTCAATTCAAAGTTGTCTTGGTGTGTGCTTGGAGTGGTGGTGGTATGAGTTCATGACAATTCTAGCAGGTTACCTTTATAACCCTCGTGTTGCTCTAGCCACAGCTGGCATAGTGATACAAACGACTTCTCTCATGTACACTTTGCCAACAGCACTAAGTGCATCAGTGTCAACAAGAGTAGGGAATGAACTTGGAGCAGGTCAACCAGAAAGGGCAAGCTTGTCAACTGTAGTAGCCATAGGAATGGCCCTTGCAAGCTCAATATTGGGGTTATTATGGACCACATTAGGGAGAGAAAGATGGGGGAGAGTGTTCACAAGTGACAGTGAAGTGTTAGAACTTACCATGGCTGTGTTGCCTATAATTGGAGTGTGTGAGCTAGCAAATTGTCCACAAACCACAAGCTGTGGAATCCTGAGAGGAAGTGCAAGGCCTGGTGTTGGTGCTGGGATAAACTTTTACTCATTTTACTTGGTGGGAGCACCAGTGGCCATAGTATTGGGATTTGTTTGGGAACTAGGGTTGGTGGGTCTGTGTTATGGGTTACTGGCAGCACAGATAGCATGTGTGGTATCAATTCTAGTTGTGGTATACAACACAAATTGGGAAAGGGAGTCATTGAAGGCAAAAAGCTTGGTGGGTAAGAGTTCATGTGACACATTGGTCGCACATGCAGACCAAACAGTCAAATGTGAAGAAGGTGTTGTCTTTCTCAATGAGAACAAGTGA 1518 0.4394 MLAEEKSQKTYPTTAEVVEELKRMTGIGFPIAAVGLVGYLKNMILVVCMGRLGSLELASGALAIGFTNITGYSVLSGLSMGMEPLCTQAFGSRNFSLVSLTLRRTILMLLLASLPISLLWLNLEPFMLCLHQNPDITRVASLYCRFSIPDLIANSFLHPIRIYLRSKGITWPLMWCTLLSILLHIPIISFFTFKLHLGVPGIAISAFVANFNTLFFLLSYMLYMHITKVSLSMPLLTSLPSSQPEKLNATSTLGKEWGLLIRFSIQSCLGVCLEWWWYEFMTILAGYLYNPRVALATAGIVIQTTSLMYTLPTALSASVSTRVGNELGAGQPERASLSTVVAIGMALASSILGLLWTTLGRERWGRVFTSDSEVLELTMAVLPIIGVCELANCPQTTSCGILRGSARPGVGAGINFYSFYLVGAPVAIVLGFVWELGLVGLCYGLLAAQIACVVSILVVVYNTNWERESLKAKSLVGKSSCDTLVAHADQTVKCEEGVVFLNENK* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01538 505 PANTHER MULTIDRUG RESISTANCE PROTEIN 15 465 - -
Rops11g01538 505 NCBIfam MATE family efflux transporter 32 441 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Rops11g01538 505 Pfam MatE 30 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Rops11g01538 505 Pfam MatE 268 428 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Rops11g01538 505 CDD MATE_eukaryotic 20 471 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01538 Rops-Chr11 23397334 23398989 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01538 K03327 - gmx:100785533 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01538 11 23397334 23398989 Rops11g01538 11 23397334 23398989 ECH
Rops2g04896 2 88285636 88287601 Rops11g01538 11 23397334 23398989 PCT