Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04867 ATGGAGGAACCAAGCCAACTGAAGCGTGCCATGATTGATTCTTGGGCTGGGGCAATTTCTGGTGGAATATCTCGGACAGTGACATCGCCTCTTGATGTTATTAAGATTAGATTTCAGGTTCAACTGGAGCCCACAACTTCATGGGCTTTACTACGCAAGGATTTGGCCACAACTGTGCCATCAAAATATACTGGTATGCTTCAAGCAAGCAAAGATATTCTTAGAGAAGAAGGCTTACGGGGCTTTTGGCGGGGAAATGTACCGGCATTGCTCATGGTTATGCCATACACAGCTATACAATTTACAGTTTTACACAAGTTGAAGACTCTTGCCTCTGGTTCTTCCAAGACAGAGAATCACGTTAATTTGAGCCCTTATCTATCCTATGTCAGTGGGGCATTAGCTGGGTGTGCTGCTACTCTTGGTTCATATCCCTTTGATCTTCTCCGAACCATATTAGCTTCTCAGGGTGAGCCAAAGGTGTATCCAAACATGAGGTCAGCATTCATTGATATCATCCAAACCCGTGGATTGCAAGGTTTGTATGCTGGATTATCACCAACACTAGTTGAGATTGTACCTTATGCAGGCCTACAATTTGGAACCTATGATACATTTAAGCGCTGGGCCACGGCTTGGAACCATAGATATACCAGCACCACTCTAGAGGATAGTCCCTCTAGCTTTCAGCTTTTCCTTTGTGGGTTGGCGGCTGGAACATGCGCCAAACTTGTCTGTCATCCACTTGATGTTGTCAAGAAAAGATTTCAGATCGAAGGGCTTCAAAGGCATCCAAGATATGGAGCCCGAGTTGAGCATCGTGCATACAGTAATATGTTTGATGCCATGCAACAGATATTGCGGTTGGAGGGTTGGGCCGGTCTATACAAGGGGATCATCCCATCAACTGTTAAAGCTGCACCAGCCGGTGCGGTCACATTTGTTGCATATGAATTGATCTCAGATTGGTTAGAGTCCATCGAAACTTGA 990 0.4525 MEEPSQLKRAMIDSWAGAISGGISRTVTSPLDVIKIRFQVQLEPTTSWALLRKDLATTVPSKYTGMLQASKDILREEGLRGFWRGNVPALLMVMPYTAIQFTVLHKLKTLASGSSKTENHVNLSPYLSYVSGALAGCAATLGSYPFDLLRTILASQGEPKVYPNMRSAFIDIIQTRGLQGLYAGLSPTLVEIVPYAGLQFGTYDTFKRWATAWNHRYTSTTLEDSPSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYSNMFDAMQQILRLEGWAGLYKGIIPSTVKAAPAGAVTFVAYELISDWLESIET* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04867 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 209 IPR018108 -
Rops2g04867 329 Pfam Mitochondrial carrier protein 124 209 IPR018108 -
Rops2g04867 329 Pfam Mitochondrial carrier protein 227 324 IPR018108 -
Rops2g04867 329 Pfam Mitochondrial carrier protein 14 111 IPR018108 -
Rops2g04867 329 SUPERFAMILY Mitochondrial carrier 8 319 IPR023395 -
Rops2g04867 329 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Rops2g04867 329 PRINTS Mitochondrial carrier protein signature 85 105 IPR002067 GO:0055085
Rops2g04867 329 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Rops2g04867 329 PRINTS Mitochondrial carrier protein signature 235 257 IPR002067 GO:0055085
Rops2g04867 329 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Rops2g04867 329 PRINTS Mitochondrial carrier protein signature 182 200 IPR002067 GO:0055085
Rops2g04867 329 PANTHER SOLUTE CARRIER FAMILY 25 14 324 - -
Rops2g04867 329 FunFam Mitochondrial thiamine pyrophosphate carrier 1 4 326 - -
Rops2g04867 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 110 IPR018108 -
Rops2g04867 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 323 IPR018108 -
Rops2g04867 329 Gene3D Mitochondrial carrier domain 5 326 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04867 Rops-Chr2 87895699 87899889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04867 1 326 Organic Solute Cotransporters AT3G21390 73.716 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04867 K15108 - gmx:100784986 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04867 2 87895699 87899889 Rops11g01565 11 23917224 23922612 PCT