Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01565 ATGGGGGAGGAGCCAAGCCAGCTGAAACGGGCCATGATTGATTCCTCTGCTGGGGCTATTTCCGGTGCTATATCACGGACAGTAACATCACCCCTTGATGTTATTAAGATTAGGTTCCAGGTTCAACTAGAGCCCACATCTTCGTGGGCTTTACTACGCAAGGATTTGTCTAAACCCTCAAAATATACTAGCATGCTTCAAGCAACCAAAGATATTTTTAGAGAAGAAGGCATACAGGGTTTTTGGCGGGGTAATGTGCCAGCTTTGCTCATGGTTATGCCTTATACAGCTATACAATTTACTGTATTACACAAGATAAAGACTTTTGCTTCTGGTTCTTCCAAGACAGAGAATCACATTAATTTGAGCCCTTACCTATCCTACATAAGTGGGGCATTAGCTGGGTGTGCAGCTACTGTAGGGTCATATCCCTTTGATCTTCTCCGAACCATATTAGCTTCTCAAGGTGAACCAAAGGTTTATCCAAACATGAGGTCAGCATTCATTGATATTATTCAGACTCGTGGCTTCCAAGGTTTGTATGCTGGATTGTCACCCACACTAGTTGAGATTATACCTTATGCAGGCCTACAATTCGGCACCTATGATACATTTAAACGTTGGGCCATGACATGGAACCATCTTCAATATTCAAATACTACAGCAGAAGATAGCCCCTCTAGCTTTCAGCTTTTCCTGTGTGGGTTGGCAGCAGGAACATGTGCTAAGCTTGTCTGTCATCCACTTGATGTAGTCAAGAAAAGATTTCAGATTGAAGGTCTACAAAGGCATCCAAGGTATGGAGCTCGGGTTGAACATCGTGCATACAGAAACATGTTTGATGCCATGAAACGGATATTACAGAGCGAGGGTTGGGCTGGTCTATACAAGGGGATAGTCCCATCAACTGTTAAAGCTGCACCAGCTGGTGCTGTAACATTTGTTGCATATGAATTGACATCAGATTGGCTTGAGTCTATTTGGACATGA 990 0.4333 MGEEPSQLKRAMIDSSAGAISGAISRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLSKPSKYTSMLQATKDIFREEGIQGFWRGNVPALLMVMPYTAIQFTVLHKIKTFASGSSKTENHINLSPYLSYISGALAGCAATVGSYPFDLLRTILASQGEPKVYPNMRSAFIDIIQTRGFQGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWAMTWNHLQYSNTTAEDSPSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYRNMFDAMKRILQSEGWAGLYKGIVPSTVKAAPAGAVTFVAYELTSDWLESIWT* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01565 329 SUPERFAMILY Mitochondrial carrier 10 318 IPR023395 -
Rops11g01565 329 PANTHER SOLUTE CARRIER FAMILY 25 15 324 - -
Rops11g01565 329 PRINTS Mitochondrial carrier protein signature 27 41 IPR002067 GO:0055085
Rops11g01565 329 PRINTS Mitochondrial carrier protein signature 137 155 IPR002067 GO:0055085
Rops11g01565 329 PRINTS Mitochondrial carrier protein signature 235 257 IPR002067 GO:0055085
Rops11g01565 329 PRINTS Mitochondrial carrier protein signature 14 27 IPR002067 GO:0055085
Rops11g01565 329 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
Rops11g01565 329 PRINTS Mitochondrial carrier protein signature 84 104 IPR002067 GO:0055085
Rops11g01565 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 9 109 IPR018108 -
Rops11g01565 329 Gene3D Mitochondrial carrier domain 6 326 IPR023395 -
Rops11g01565 329 FunFam Mitochondrial thiamine pyrophosphate carrier 1 5 326 - -
Rops11g01565 329 Pfam Mitochondrial carrier protein 15 110 IPR018108 -
Rops11g01565 329 Pfam Mitochondrial carrier protein 123 210 IPR018108 -
Rops11g01565 329 Pfam Mitochondrial carrier protein 227 324 IPR018108 -
Rops11g01565 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 323 IPR018108 -
Rops11g01565 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 208 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01565 Rops-Chr11 23917224 23922612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01565 3 329 Organic Solute Cotransporters AT3G21390 76.435 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01565 K15108 - gmx:100784986 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01565 11 23917224 23922612 Rops11g01565 11 23917224 23922612 ECH
Rops2g04867 2 87895699 87899889 Rops11g01565 11 23917224 23922612 PCT