Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04350 ATGGCCGTTCAAGCTCAATACCCATCCAATGTTCTCCTTCTAAACAGCAGAAACGGGCAAGAAGGACATGAGTACTCATTACAACAACAACCTGCAGGACTACTTGATCAATCCCTTATGCTATACAACAACAACAATGGAACAGGTACTAATTCTCGCAAGAGAGGGAGAGAAGGAACAGAGGTTGGCCACACAACAACAGCCGCTAATGTTATGAATCCATTCTCTTTGCAATCTCAGCCTCCACAGCTTATACAACTCTCTCAGCTCCATAATCAACAACAAAATGTGGTCTCTACTGGCTTACGTTTATCCTTCGATCACCAGCAACAACAAAGATTACAACTTCATCAAAATCAATCTCAACAACAACATGATGGGTCTCCTCACTCCTCTGCTCTCTTATCTCTATTATCTGAAGGTCTTGTTTCCCAAATCAAACTACAACGAGATGAAATAGACCAATTCCTTCAAGCCCAGGGAGAACAACTGCGTCGGACATTGGCGGAGAAGAGGCAGGGGCATTACCATGCACTGCTGAGCGCGGCGGAGGAGGCGGTGGCGCGACGGTTGAGAGAGAAGGAAGCTGAGGTGGAGAAAGCGACACGCAAGAACGCAGAGTTAGAGGCACGTGCGTCCCAGCTGAGCGTGGAGGCTCAGGTGTGGCAAGCCCGGGCCAAGGCCCAGGAGGCAACGGCAGCTTCCCTTCAAGCCCAACTGCAACAGACCATAATGTGTCACGGTGGCGATGACGGCGGAGGAGTATCGTGTGCCGTGGAGGGCCAGGCTGAGGATGCTGAGTCAGCTTATATTGACCCGGACCGAGTCGTGGTGGCGGCGGCGGCGCGTCCCAAATGTAGAGGGTGTGGGAAGCGCGTGGCTTCGGTGGTTGTTTTGCCTTGTCGGCACTTATGCATTTGTACAGAATGCGATGCACATTTCCAAGCATGCCCTGTTTGTCTCACCCTCAAGAATTCAACCGTTGAGGTTTTTCTCTCTTAG 1002 0.508 MAVQAQYPSNVLLLNSRNGQEGHEYSLQQQPAGLLDQSLMLYNNNNGTGTNSRKRGREGTEVGHTTTAANVMNPFSLQSQPPQLIQLSQLHNQQQNVVSTGLRLSFDHQQQQRLQLHQNQSQQQHDGSPHSSALLSLLSEGLVSQIKLQRDEIDQFLQAQGEQLRRTLAEKRQGHYHALLSAAEEAVARRLREKEAEVEKATRKNAELEARASQLSVEAQVWQARAKAQEATAASLQAQLQQTIMCHGGDDGGGVSCAVEGQAEDAESAYIDPDRVVVAAAARPKCRGCGKRVASVVVLPCRHLCICTECDAHFQACPVCLTLKNSTVEVFLS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04350 333 ProSiteProfiles Zinc finger RING-type profile. 286 320 IPR001841 -
Rops2g04350 333 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 265 332 - -
Rops2g04350 333 Pfam Zinc finger, C3HC4 type (RING finger) 285 321 - -
Rops2g04350 333 CDD mRING-HC-C3HC5_CGRF1-like 284 320 - -
Rops2g04350 333 PIRSF SBP1_RNase_bind 1 333 IPR017066 -
Rops2g04350 333 MobiDBLite consensus disorder prediction 109 132 - -
Rops2g04350 333 Coils Coil 184 239 - -
Rops2g04350 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 333 IPR013083 -
Rops2g04350 333 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 43 330 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04350 Rops-Chr2 79319067 79320599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04350 286 322 Miscellaneous Gene Families AT2G21380 37.838 3.60e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04350 K19042 - gmx:100788924 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04350 2 79319067 79320599 Rops2g04350 2 79319067 79320599 ECH
Rops1g01974 1 39966996 39969182 Rops2g04350 2 79319067 79320599 PCT