Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01974 ATGGCTGTCCAAGCTCAATACCCCTCCAATGTACTCCTTCTAAACAGCAAAAACGGGCAAGAAGGACATGAATATTCATTGCAACCTCAACCAGGAGGACTCCTTGATCAATCCCATATGTTATTCAACAATGGAGGTACTAATTCTCGGAAGAGAGGAAGAGAAGCGACAGGGGTTGCTTATACATCTCCTAATAATGTTATGAATCCATTCTCTTTGCAATCCCAGTCTCCACAGCTTATAGACCTCACGCAACTCCATAATCAACAACAAAATGTAGTCTCTACCGGTTTACATTTATCCTTTGGCGACCCACAACAATTGCGTCCACAACAACAAAGACAACAATTGCATCCACAACAACAACAAAGACAACAAAATGAGTGTCAGTCCTCTCATTTCTTATCTCTATTATCTCAAGGCTTGGCATCACAAATCAAACAACAAAGAGACGAAATAGACCAATTTCTCCAAGCCCAGGGAGAACAATTACGGCGGACATTAACAGAGAAGAGACAGAGACATTATCGGACACTGCTAAGCGCGGCGGAGGAATCAGTTGCACGACGGTTAAGAGAGAAGGAAGCAGAGATGGAGAAGGCCACACGCAGGAACGCTGAGTTAGAGGCACGCGCGGCGCAACTTAGCGTGGAGGCGCAGGTTTGGCAGGCAAAGGCAAAAGCGCAGGAAGCAACTGCTGCATCTTTGCAAGCACAACTGCAACAAGCTATCATGAACGGTGGTGGTGGTTTTGAGAAGAGGAGTGTGATTGAAGATGGTGGTGGGCTATCGTGCGCCGTGGGTGTAGAGGGCCAAGCGGAGGATGCTGAGTCAGCATATGTTGACCCGGAACGAGTGGTGGTGTCAGGTCCCAAATGTAGAGGTTGTGGGAAGCGTGTGGCTTCGGTGGTGGTGATGCCTTGTCGCCACCTATGTTTCTGCACAGAATGTGATAGAAATTTCCGGGCATGCCCTGTTTGCCTCACCGTTAAAAATTCAACCGTTGAAGTTTATCTATCCTAG 1023 0.4731 MAVQAQYPSNVLLLNSKNGQEGHEYSLQPQPGGLLDQSHMLFNNGGTNSRKRGREATGVAYTSPNNVMNPFSLQSQSPQLIDLTQLHNQQQNVVSTGLHLSFGDPQQLRPQQQRQQLHPQQQQRQQNECQSSHFLSLLSQGLASQIKQQRDEIDQFLQAQGEQLRRTLTEKRQRHYRTLLSAAEESVARRLREKEAEMEKATRRNAELEARAAQLSVEAQVWQAKAKAQEATAASLQAQLQQAIMNGGGGFEKRSVIEDGGGLSCAVGVEGQAEDAESAYVDPERVVVSGPKCRGCGKRVASVVVMPCRHLCFCTECDRNFRACPVCLTVKNSTVEVYLS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01974 340 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 275 339 - -
Rops1g01974 340 ProSiteProfiles Zinc finger RING-type profile. 293 327 IPR001841 -
Rops1g01974 340 Coils Coil 184 246 - -
Rops1g01974 340 Pfam Zinc finger, C3HC4 type (RING finger) 292 329 - -
Rops1g01974 340 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 43 337 IPR017066 -
Rops1g01974 340 PIRSF SBP1_RNase_bind 1 340 IPR017066 -
Rops1g01974 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 340 IPR013083 -
Rops1g01974 340 MobiDBLite consensus disorder prediction 100 130 - -
Rops1g01974 340 CDD mRING-HC-C3HC5_CGRF1-like 291 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01974 Rops-Chr1 39966996 39969182 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01974 K19042 - gmx:100779548 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01974 1 39966996 39969182 Rops1g01974 1 39966996 39969182 ECH
Rops1g01974 1 39966996 39969182 Rops2g04350 2 79319067 79320599 PCT