Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04241 ATGAAAAGCCACAATGCATCATTTCCTTCTTCATCTGAAGAATCTTCCTATACTCTCCTCCCACATGGGCCCCCCCACCCTCGCGGTCGCCGGAAGGAGATTCTTCTCATCGTTTTCGGGTCGCTTTTACTTGCTTCGTTGATCGCCTTCAATGGCTATAGGAACTCCAACGTACGGGCTCATCATGCTGACGTATCATCCAGCGAAGAACAGAACACAAAAACGGTGCCTTCATCGAAGTGGCACCCGATTTCACGTGGTGTTTCTGAAGGGGTGTCGGAGAAGTCAAACATGTTATTTGCCAGCAAAGATGGAGTGTCGGAATCGTTTCCTTGGAACAATAGCATGTTGTCGTGGCAGAGAACAGCTTTTCATTTCCAACCAGAGAAGAATTGGATGAACGATCCTAACGGTCCTTTGTACTACAAGGGATGGTATCACTTTTTCTACCAATACAATCCAAACGGTGCAGTTTGGGGTGACATAGTTTGGGGACATGCAGTGTCAAGGGATATGATCCGTTGGCTTCACCTTCCACTGGCAATGGTAGCAGATCAATGGTATGACTTAAATGGTGTGTGGACAGGCTCAGCCACCATCTTACCCGATGGTCAAATCATCATGTTATACACAGGTTCAACCAATGAATCAGTGCAAGTACAGAACCTTGCATATCCTGCTGACCCTTCTGACCCCCTCCTTGTGGATTGGATCAAATACCCTGGGAACCCAGTTATGTTCCCTCCACCAGGCATTGATTCCAAGGACTTCCGTGACCCAACAACTGCTTGGTTCACCTCTGAAGGAAAGTGGCGCATAACCATAGGGTCCAAGCTTAACAAAACTGGCATTGCATTGGTTTATGACACTGAGGACTTCAAGACCTATGAGCTTAAGGAGGGTATGCTTCGTGCTGTCCCTGGCACTGGCATGTGGGAGTGTGTGGACTTCTTTCCTGTTTCCAAGAAGGCTGAAAATGGCTTGGATACCTCCATTACTGGGGCTGAGGTGAAGCATGTGATGAAGGTGAGCTTGGATGATGATAGACATGATTACTATTCGCTAGGGACTTATGATGAGAAGAAGGTTTTGTTCACACCAGATGATGTTACGAACGATGTTGGTGTTGGATTGAGGTATGACTATGGTATATTCTATGCATCCAAGACATTTTATGATCAGAGTAAGGAGAGGAGAGTGTTGTGGGGTTGGATTGGTGAATCTGACAGTGAATATGTTGATGTGGCCAAAGGTTGGGCATCAGTTCAGAGCATTCCAAGAACTGTGAAATTTGATCAGAAGACTGGTACCCACTTACTCCAGTGGCCTGTTGCGGAGGTGGAGAGTTTGAGATTAAGAAGCGATGAGTTTCAAAATTTGGAGGCAAGGCCAGGGTCAGTGGTGTCACTAGATATTGAAACAGCCACACAGTTGGATATTGTTGCTGAGTTTGAGATAGAGAAGGAAGCCCTGCAGAAAACAGCTCAGTCCAATGTGGAGTACCAGTGCAGCACCAGTGGTGGAGCTGCCCAACGTGGTGCCTTAGGACCTTTTGGTCTTCTTATTTTGGCAGATGATGGACTTTCTGAATATACTCCTGTGTACTTTTATGTTGATAAAGGAAGCAATGGAGCTCTTAAGACATCCTTCTGCTCCGATCAATCAAGGTCTTCTCTGGCAAATGATGTTCATAAGCAAATCTTTGGAAGCTTTGTTCCAGTACTTAAAGGCGAAAAGTTGTCCTTAAGGATACTGGTGGACCATTCTATAGTTGAAAGCTTTGCACAAGGTGGAAGGACATGTGTGACATCTCGTGTTTATCCAACAAGGGCAATCTATGGAGCTGCTCGATTGTTCTTGTTCAACAATGCTACTGAGGCCACTGTGACAGCCTCAATCAAGGTTTGGCAGATGAACTCTGCATTTATACGCCCATTCCACCCTGATCAGAGGAGTTAA 1959 0.4594 MKSHNASFPSSSEESSYTLLPHGPPHPRGRRKEILLIVFGSLLLASLIAFNGYRNSNVRAHHADVSSSEEQNTKTVPSSKWHPISRGVSEGVSEKSNMLFASKDGVSESFPWNNSMLSWQRTAFHFQPEKNWMNDPNGPLYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIRWLHLPLAMVADQWYDLNGVWTGSATILPDGQIIMLYTGSTNESVQVQNLAYPADPSDPLLVDWIKYPGNPVMFPPPGIDSKDFRDPTTAWFTSEGKWRITIGSKLNKTGIALVYDTEDFKTYELKEGMLRAVPGTGMWECVDFFPVSKKAENGLDTSITGAEVKHVMKVSLDDDRHDYYSLGTYDEKKVLFTPDDVTNDVGVGLRYDYGIFYASKTFYDQSKERRVLWGWIGESDSEYVDVAKGWASVQSIPRTVKFDQKTGTHLLQWPVAEVESLRLRSDEFQNLEARPGSVVSLDIETATQLDIVAEFEIEKEALQKTAQSNVEYQCSTSGGAAQRGALGPFGLLILADDGLSEYTPVYFYVDKGSNGALKTSFCSDQSRSSLANDVHKQIFGSFVPVLKGEKLSLRILVDHSIVESFAQGGRTCVTSRVYPTRAIYGAARLFLFNNATEATVTASIKVWQMNSAFIRPFHPDQRS* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04241 652 Pfam Glycosyl hydrolases family 32 C terminal 446 637 IPR013189 -
Rops2g04241 652 Gene3D Glycosyl hydrolase domain; family 43 129 454 IPR023296 -
Rops2g04241 652 Pfam Glycosyl hydrolases family 32 N-terminal domain 125 443 IPR013148 -
Rops2g04241 652 CDD GH32_Fruct1-like 131 429 - -
Rops2g04241 652 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 114 641 - -
Rops2g04241 652 SUPERFAMILY Arabinanase/levansucrase/invertase 118 444 IPR023296 -
Rops2g04241 652 Gene3D - 455 638 - -
Rops2g04241 652 MobiDBLite consensus disorder prediction 62 81 - -
Rops2g04241 652 Pfam Beta-fructofuranosidase, N-terminal domain 20 117 IPR021792 GO:0004564
Rops2g04241 652 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 129 455 - -
Rops2g04241 652 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 455 638 - -
Rops2g04241 652 ProSitePatterns Glycosyl hydrolases family 32 active site. 125 138 IPR018053 GO:0004553|GO:0005975
Rops2g04241 652 MobiDBLite consensus disorder prediction 1 18 - -
Rops2g04241 652 SUPERFAMILY Concanavalin A-like lectins/glucanases 443 642 IPR013320 -
Rops2g04241 652 MobiDBLite consensus disorder prediction 1 25 - -
Rops2g04241 652 SMART glyco_32 125 598 IPR001362 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04241 Rops-Chr2 77117746 77121858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04241 1 646 Glycoside Hydrolase AT1G12240 63.922 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04241 K01193 - gmx:100788844 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04241 2 77117746 77121858 Rops2g04241 2 77117746 77121858 ECH
Rops1g02080 1 41826921 41831063 Rops2g04241 2 77117746 77121858 PCT