Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02080 ATGGGAAAACCCAACACAATTGCCCGTTCCTCTGATCCTAATGACTCTTCTATTCTCCCTTGTTCTTATGTTCCTGTACCCGATGGGCCCCACTCCGCCGAAGCTCCGACGGAGCCTCGACAGCTGAAGAAGGTGGTTTTGATCTCAAGTGGGTTGTTAATGCTAGTAGTTGTTTCCTTGGTGACCTTCAATGGCTACATGGAATCAAATGGACATGGAGATGTGCCATCGCCAACTTTAACAACATCGAATGAAGAATTGACACCAAAAACAGTACCTTGGTCAACATGGCAGCCTGTTTCACGTGGTGTGTCTGAAGGGGTATCAGAGAAATCCAACAGGTTATTCACCAGCAACAATGGTGAATTGTATCCTTGGAACAACACTATGCTATCATGGCAGAGGACAGCTTTCCATTTCCAGCCTGAAAAGAATTGGATGAACGATCCTAGTGGTCCATTGTACTACAAGGGGTGGTATCACTTCTTCTACCAATACAATCCAGAGGGTGCAGTTTGGGGTGACATAGTTTGGGGACACGCAGTGTCAAGGAACTTGATCCATTGGCTTCACCTTCCACTAGCAATGGTAGCAGATCAATGGTATGACAAAAACGGTGTATGGACAGGCTCTGCTACAATCTTACCCAATGGTGAAGTCATCATGTTATACACAGGTTCCACCAATGAGTCAGTGCAGGTACAGAACTTAGCCTACCCTGCTGACCCATCTGACCCTCTCCTTATTGATTGGATCAAATACCCTGGAAACCCAGTTCTGTTCCCACCACCAGGCATTGGTGCCAAGGATTTCCGTGACCCAACCACTGCTTGGTTCACCTCTGAACGAAAGTGGCGCATCACCATTGGGTCTAAACTTAACAAAACTGGCATTGCCTTGGTTTATGACACTGATGATTTCAAGAACTACGAGCTTAAAGAGGGAATGCTTCGTGCTGTGCCAGCTACTGGCATGTGGGAGTGTATTGATTTCTTCCCTGTATCCACCAAGGCTGAAAATGGCTTGGATACTTCGGTTAATGTGGCTGATGTGAAGCATGTGGTGAAGGTTAGCCTGGATGATGATAGACATGATTACTATGCAATTGGGACTTATGATGAAAGCAATGTAAACTTCATACCAGATGATTTCAAGACTGATGTTGGTATTGGATTGAGGTATGACTATGGCATATTTTATGCATCCAAGACATTTTATGATCAAAGTAAAGGGAGGAGAGTTTTGTGGGGTTGGATTGGAGAGTCAGACAGTGAATATGCTGATGTGACCAAAGGTTGGGCATCAGTTCAGGGTATTCCAAGAACAGTGATGCTAGATAAAAAAACTGGTAGCAACCTACTTCAATGGCCTGTCGCGGAGGTGGAGAGTTTGAGATTGAGAAGCGACGAGTTTGAAAATTTGAAGGCGAAGCCAGGGTCAGTGGTGCCACTAGATATTGGAACAGCCACGCAGTTGGACATCGTAGCTGAGTTTGAGATAGATAAGGAAGCCTTGGAGAAGGTAGAGCAGTCCAATGTGGAGTACAAGTGTGGCACCAGTGGTGGAGCAGCTGAACGTGGTGCCTTAGGACCTTTTGGTCTTCTGGTTCTGGCAGACAAAGGCCTTTCTGAATATACTCCTGTTTACTTCTATGTTGTTAAAGGAAGTGATGGACATCTTAAGACTTCCTTCTGCTCTGATCAATCAAGGTCTTCACTGGCAATTGATGTTGATAAGAAAATCTTTGGAAGCTTTGTTCCAGTACTCAAAGACGAAAAGCTGTCTGTGAGGATATTGGTGGATCATTCTATTGTTGAAATCTTTGCTCAAGGTGGAAGGACGTGCGTGACTTCCCGGGTTTATCCAACAAGGGAAATCGATGGAAGTGCTCGATTGTTCTTGTTCAATAATGCTACTGAGGCCACTGTGACTGCCTCACTCAAGGTTTGGCAGATGAACTCTGCATTCATACGCCCATTCCACCCTGACCAGAGGAGTTAA 2001 0.4533 MGKPNTIARSSDPNDSSILPCSYVPVPDGPHSAEAPTEPRQLKKVVLISSGLLMLVVVSLVTFNGYMESNGHGDVPSPTLTTSNEELTPKTVPWSTWQPVSRGVSEGVSEKSNRLFTSNNGELYPWNNTMLSWQRTAFHFQPEKNWMNDPSGPLYYKGWYHFFYQYNPEGAVWGDIVWGHAVSRNLIHWLHLPLAMVADQWYDKNGVWTGSATILPNGEVIMLYTGSTNESVQVQNLAYPADPSDPLLIDWIKYPGNPVLFPPPGIGAKDFRDPTTAWFTSERKWRITIGSKLNKTGIALVYDTDDFKNYELKEGMLRAVPATGMWECIDFFPVSTKAENGLDTSVNVADVKHVVKVSLDDDRHDYYAIGTYDESNVNFIPDDFKTDVGIGLRYDYGIFYASKTFYDQSKGRRVLWGWIGESDSEYADVTKGWASVQGIPRTVMLDKKTGSNLLQWPVAEVESLRLRSDEFENLKAKPGSVVPLDIGTATQLDIVAEFEIDKEALEKVEQSNVEYKCGTSGGAAERGALGPFGLLVLADKGLSEYTPVYFYVVKGSDGHLKTSFCSDQSRSSLAIDVDKKIFGSFVPVLKDEKLSVRILVDHSIVEIFAQGGRTCVTSRVYPTREIDGSARLFLFNNATEATVTASLKVWQMNSAFIRPFHPDQRS* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02080 666 SUPERFAMILY Arabinanase/levansucrase/invertase 132 458 IPR023296 -
Rops1g02080 666 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 143 469 - -
Rops1g02080 666 Pfam Beta-fructofuranosidase, N-terminal domain 22 131 IPR021792 GO:0004564
Rops1g02080 666 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 128 655 - -
Rops1g02080 666 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 469 652 - -
Rops1g02080 666 Pfam Glycosyl hydrolases family 32 C terminal 460 651 IPR013189 -
Rops1g02080 666 Pfam Glycosyl hydrolases family 32 N-terminal domain 139 457 IPR013148 -
Rops1g02080 666 Gene3D - 469 652 - -
Rops1g02080 666 CDD GH32_Fruct1-like 145 445 - -
Rops1g02080 666 SMART glyco_32 139 612 IPR001362 GO:0004553|GO:0005975
Rops1g02080 666 Gene3D Glycosyl hydrolase domain; family 43 143 468 IPR023296 -
Rops1g02080 666 SUPERFAMILY Concanavalin A-like lectins/glucanases 457 656 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02080 Rops-Chr1 41826921 41831063 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02080 8 660 Glycoside Hydrolase AT1G12240 63.213 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02080 K01193 - gmx:100798772 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02080 1 41826921 41831063 Rops1g02080 1 41826921 41831063 ECH
Rops1g02080 1 41826921 41831063 Rops2g04241 2 77117746 77121858 PCT