Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04087 ATGGAAATGAAGAAGCTCTTTTATGTTGCTCTGTCCCTTGCTTTGGTTCTTGGAGTGGCTGAGAGCTTTGATTTCCATGAGAAGGATTTGGCATCCGAGGAAGGTTTGTGGGGTTTGTACGAGAGATGGAGAAGCCACCACACGGTTTCTCGAAGCCTCGATGAGAAGCACAAACGCTTCAACGTGTTCAAAGCCAATGTGATGCATGTCCACAACACCAATAAACTGGACAAGCCTTACAAGCTAAAGTTGAACAAGTTTGCTGACATGACCAACTACGAATTCAGGAGCATCTATGCTGGCTCCAAGATTAATCATCACAGAATGTTCCGTGGCACACCACGTGATGAGAATGGAACCTTCATGTATTGGAACGTTGAAAGAGTTCCTCAATCAATAGATTGGAGGAAGAAAGGTGCTGTCACTGGTGTTAAGGATCAAGGCAATTGTGGTAGTTGCTGGGCATTTTCAACTGTTGTAGCTGTTGAAGGTATTAACCAAATCAAGACACATAAGCTAGTGTCCTTGTCTGAGCAAGAGCTTGTTGATTGTGACAAGGAAATGAATGCGGGATGCAATGGTGGGTTAATGGAATTTGCGTTTGAGTTCATCAAGCAAAATGGTATAACAACAGAAAGTAATTACCCTTATACAGCAAAAGATGGAATCTGTGAGGTAACTAAGGAGAATGAGCCATCAGTGTCAATTGATCACTATGAGACTGTCCCCACCAACAATGAGGCAGCGTTGCTCAAAGCTGTTGCCCACCAACCAGTATCTGTAGCCATTGATGCTGGGGGATCTGACTTCCAGTTCTACTCAGAGGGAGTATTCACTGGAGACTGTGGCAGTGACCTGAATCATGGGGTGGCAATTGTGGGGTATGGAACAACTAAAGATGGGACCAAATATTGGATTGTGAAGAACTCATGGGGATCTGAATGGGGAGAGCAGGGTTACATTAGAATGCAAAGGGGCCTATATGACAAGAAAGGTGTATGTGGCATAGCAATGGAGGCTTCCTATCCAATCAAAAAGTCCTCTAGAAACCCAACAAAACCTTCATCATTTCCTAAAGACGAGCTTTAA 1089 0.4399 MEMKKLFYVALSLALVLGVAESFDFHEKDLASEEGLWGLYERWRSHHTVSRSLDEKHKRFNVFKANVMHVHNTNKLDKPYKLKLNKFADMTNYEFRSIYAGSKINHHRMFRGTPRDENGTFMYWNVERVPQSIDWRKKGAVTGVKDQGNCGSCWAFSTVVAVEGINQIKTHKLVSLSEQELVDCDKEMNAGCNGGLMEFAFEFIKQNGITTESNYPYTAKDGICEVTKENEPSVSIDHYETVPTNNEAALLKAVAHQPVSVAIDAGGSDFQFYSEGVFTGDCGSDLNHGVAIVGYGTTKDGTKYWIVKNSWGSEWGEQGYIRMQRGLYDKKGVCGIAMEASYPIKKSSRNPTKPSSFPKDEL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04087 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Rops2g04087 362 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 34 342 IPR013128 GO:0008234
Rops2g04087 362 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Rops2g04087 362 SMART Inhibitor_I29_2 40 95 IPR013201 -
Rops2g04087 362 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Rops2g04087 362 PRINTS Papain cysteine protease (C1) family signature 147 162 IPR000668 GO:0006508|GO:0008234
Rops2g04087 362 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Rops2g04087 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Rops2g04087 362 SMART pept_c1 129 344 IPR000668 GO:0006508|GO:0008234
Rops2g04087 362 CDD Peptidase_C1A 130 343 IPR039417 -
Rops2g04087 362 SUPERFAMILY Cysteine proteinases 39 344 IPR038765 -
Rops2g04087 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 147 158 IPR000169 -
Rops2g04087 362 Gene3D Cysteine proteinases 14 346 - -
Rops2g04087 362 Pfam Papain family cysteine protease 129 344 IPR000668 GO:0006508|GO:0008234
Rops2g04087 362 FunFam Senescence-specific cysteine protease SAG39 20 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04087 Rops-Chr2 74377957 74379440 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04087 K16292 - gmx:100806581 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04087 2 74377957 74379440 Rops2g04087 2 74377957 74379440 ECH
Rops2g04087 2 74377957 74379440 Rops10g00742 10 17773294 17775108 PCT