Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00742 ATGGAAATGAAGAAGCTCTTGTGGGTTGTTCTATCCCTTGCTTTAGTTCTTGGAGTTGCCAAGAGCTTTGATTTTCACGAGAAGGATTTGGCATCCGAGGAAAGCTTGTGGGACTTGTATGAAAGGTGGAGGAGTCACCACACAGTTTCTCGGAGCCTTCATGACAAGGACAAGCGCTTTAACGTGTTCAAAGCAAATGTGATGCATGTTCACAACACTAACAAAATGAATAAGCCTTACAAGCTGAAACTGAACAAGTTTGCTGATATGACCAACCATGAATTCAAGAGTACCTTCGCTGGCTCAAAGGTTAGTCACCACAGAATGTTCAGAGGCACCCCACGTGGGAGTGGGACCTTCATGTATGAGAAGGTTGACAAAGTTCCTCCTTCTGTGGATTGGAGGAAGAAAGGTGCTGTCACTGATGTAAAGGATCAAGGCCACTGTGGTAGTTGCTGGGCGTTTTCGACTGTTGTAGCTGTTGAAGGCATTAACCAAATCAAGACAAATAAGCTGGTGCCCTTGTCTGAACAAGAGCTGGTGGATTGTGACAATGAAGAAAATCAGGGATGCAATGGTGGGCTAATGCAATATGCTTTTGAGTACATCAAGCAAAAGGGTGGCATAACAACCGAAAGCAATTACCCTTACACTGCAACAGAAGGATCTTGTGATGCATCAAAGCAGAATGAGCCATCTGTGTCAATTGATGGCCATGAGACTGTTCCTGCTAACGATGAAAATGCATTGCTCAAAGCTGTTGCCAATCAACCTGTATCAGTAGCCATAGATGCTGGGGGATCTGATCTCCAATTCTACTTAGAGGGAGTATTTGCTGGCGATTGTGGCACAGAGCTAAATCATGGTGTAGCAGTTGTGGGATATGGAACAACTGTTGATGGAACTAATTACTGGATAGTGAAGAACTCATGGGGACCACAATGGGGTGAACAAGGTTACATAAGAATGCAAAGGAACATATCTGACAAAGAGGGACTCTGTGGCATAGCTATGGAGGCTTCCTACCCAACCAAAAGCTCATCTAATAATCCAACAGGACCTTCCTCATCTCTTAAAGATGAGCTTTGA 1089 0.4426 MEMKKLLWVVLSLALVLGVAKSFDFHEKDLASEESLWDLYERWRSHHTVSRSLHDKDKRFNVFKANVMHVHNTNKMNKPYKLKLNKFADMTNHEFKSTFAGSKVSHHRMFRGTPRGSGTFMYEKVDKVPPSVDWRKKGAVTDVKDQGHCGSCWAFSTVVAVEGINQIKTNKLVPLSEQELVDCDNEENQGCNGGLMQYAFEYIKQKGGITTESNYPYTATEGSCDASKQNEPSVSIDGHETVPANDENALLKAVANQPVSVAIDAGGSDLQFYLEGVFAGDCGTELNHGVAVVGYGTTVDGTNYWIVKNSWGPQWGEQGYIRMQRNISDKEGLCGIAMEASYPTKSSSNNPTGPSSSLKDEL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00742 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Rops10g00742 362 MobiDBLite consensus disorder prediction 340 362 - -
Rops10g00742 362 SUPERFAMILY Cysteine proteinases 32 344 IPR038765 -
Rops10g00742 362 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 31 342 IPR013128 GO:0008234
Rops10g00742 362 FunFam Senescence-specific cysteine protease SAG39 20 345 - -
Rops10g00742 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Rops10g00742 362 SMART Inhibitor_I29_2 40 95 IPR013201 -
Rops10g00742 362 Gene3D Cysteine proteinases 14 346 - -
Rops10g00742 362 SMART pept_c1 128 344 IPR000668 GO:0006508|GO:0008234
Rops10g00742 362 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Rops10g00742 362 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Rops10g00742 362 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Rops10g00742 362 Pfam Papain family cysteine protease 128 344 IPR000668 GO:0006508|GO:0008234
Rops10g00742 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Rops10g00742 362 MobiDBLite consensus disorder prediction 341 362 - -
Rops10g00742 362 CDD Peptidase_C1A 129 343 IPR039417 -
Rops10g00742 362 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00742 Rops-Chr10 17773294 17775108 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00742 K16292 - gmx:548011 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00742 10 17773294 17775108 Rops10g00742 10 17773294 17775108 ECH
Rops2g04087 2 74377957 74379440 Rops10g00742 10 17773294 17775108 PCT