Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04040 ATGAAGGCAACACTAAGGTACTTAGCTGGCATTGCAGGGCCTAGTGGTTTTGGCTCAAATTCAACTGCAGAGCAAGTCACTGAAGATTGCTCTTCCTTGCTCCCTTCAAATCTAACCGCTTTGATCACTGGTGCTACTTCTGGTATTGGAGCTGAAACAGCTAGGGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGATTGGTGCCAGGGACTTGAAAAAGGCGAGGGAAGTGAGAGAGAAAATCCAAAAGGAGAGTCCTTACGCTGAGATTATTCTCTTGGAGATTGATCTTAGCTCTTTTGCTTCTGTACAGAGATTTTGTTCAGAGTTTCTAGCTTTAGAACTGCCCCTTAATATTCTCATAAACAATGCAGGAATATACTCTCAAGACTTGGAATTCTCCGAAGAGAAAATTGAATTGACATTTGCTACAAATTACTTAGGACATTTTTTGTTAACAAAAATGCTACTAGAGAAAGTGATAGATACTGCAAACAAGACAGGCATTGAAGGAAGAATAATAAACGTTTCTTCAGTGATTCATAGCTGGGTAAAAAGAACTAGTTTTTGTTTCGATGACATGATCAGCGGAAAAAGTTATAATGGCACACGTGCATATGCTCAGTCAAAATTGGCCACAATTCTGCATGTGAAGGAAATGGCCAGACAGCTGAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGTGCATCCAGGCATTGTGAAGACGGGAATTATTAGAGCACATAAAGGCTTAATAACGGATTCCCTGTTTTTCATTGCATCAAAGTTACTGAAATCGGTATCACAGGGTGCATCAACGACGTGTTATGTTGCACTAAGCCGAGAAACAGAAGGGGTGAGTGGGAGATACTTCACAGATTGTAACGACAGTAACTGCTCAAGTCTTGCAAACGATGAATCAGAAGCTAAAAAGCTATGGAACGACACCTTTGCCTTGCTCCACAAACGACTACGACAAGCTGCAACTTGA 993 0.4129 MKATLRYLAGIAGPSGFGSNSTAEQVTEDCSSLLPSNLTALITGATSGIGAETARVLAKRGVRVVIGARDLKKAREVREKIQKESPYAEIILLEIDLSSFASVQRFCSEFLALELPLNILINNAGIYSQDLEFSEEKIELTFATNYLGHFLLTKMLLEKVIDTANKTGIEGRIINVSSVIHSWVKRTSFCFDDMISGKSYNGTRAYAQSKLATILHVKEMARQLKARNARVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSVSQGASTTCYVALSRETEGVSGRYFTDCNDSNCSSLANDESEAKKLWNDTFALLHKRLRQAAT* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04040 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Rops2g04040 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Rops2g04040 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Rops2g04040 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Rops2g04040 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Rops2g04040 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Rops2g04040 330 Pfam short chain dehydrogenase 197 246 IPR002347 -
Rops2g04040 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Rops2g04040 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 296 IPR036291 -
Rops2g04040 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Rops2g04040 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Rops2g04040 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Rops2g04040 330 Gene3D - 31 325 - -
Rops2g04040 330 PANTHER RETINOL DEHYDROGENASE 14 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04040 Rops-Chr2 73729051 73732613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04040 17 294 Acyl Lipid Metabolism Gene Families AT3G46170 26.897 1.32e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04040 - - gmx:100776567 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04040 2 73729051 73732613 Rops2g04040 2 73729051 73732613 ECH
Rops2g04040 2 73729051 73732613 Rops10g00684 10 16709401 16714686 PCT