Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00684 ATGAAGGCAACACTGAGATACTTAGCAGGAATTGCAGGCCCTAGTGGTTTTGGCTCAAATTCAACAGCTGAGCAGGTTACTGAAAATTGTTCTAGGTTCCTTCCTTCTGATCTAACAGCTCTGATAACTGGGGTAACTTCTGGTATTGGAGCTGAAACAGCTAGGGTGTTAGCAAAGAGAGGGGTGAGGGTTGTGATTGCTGCAAGGGACTTGAAGAAGGGAAGAGAAGTGAGAGACAAGATACAAAGGGAAAGTCCAAAGGCTGAGGTTATTCTGTTGGAGATTGATCTTAACTCTTTTGGTTCTGTGCAGAGATTTTGTTCTGAGTTTTTAGCTTTAGAACTTCCACTTAATATTCTCATAAACAATGCAGGGATATTCTCTCAAAACTTGGAGTTCTCTGAAGATAAAATTGAGATGACATTTGCTACAAATTACTTAGGTCATTTTTTGTTGACAGAAATATTATTAGACAAAATGATAGAAACAGCAGAGAAGACAGGCATTCAAGGAAGAATAATAAACGTTTCTTCTGTCATCCATAGCTGGGTGAAGAGAGATGGTTTTCGTTTCAACGACATACTCATTGGAAAAAACTATAATGGTACACGCGCTTATGCTCAGTCAAAAATGGCCAATATTTTGCATGCCAAGGAAATAGCCAGACAACTCAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGTACATCCAGGCATTGTGAAGACAGGAATTATTAGAGCTCATAAAGGCTTATTAACGGATTCCATTTTTTTCATCGCATCAAAGTTACTCAAATCGACATCACAGGGTGCATCAACTACGTGTTATGTAGCTCTGAGCCCAAAAACAGAAGGGATAAGTGGGAAATACTTTGCAGATTGTAATGAGAGTAAGTGCTCAAGCTTAGCAAATGATGAATCAGAAGCTCAAAAGCTATGGAACAATACACATGCCTTACTTCAAAAAAGACTACGTCAAGCAACAATCTGA 993 0.3907 MKATLRYLAGIAGPSGFGSNSTAEQVTENCSRFLPSDLTALITGVTSGIGAETARVLAKRGVRVVIAARDLKKGREVRDKIQRESPKAEVILLEIDLNSFGSVQRFCSEFLALELPLNILINNAGIFSQNLEFSEDKIEMTFATNYLGHFLLTEILLDKMIETAEKTGIQGRIINVSSVIHSWVKRDGFRFNDILIGKNYNGTRAYAQSKMANILHAKEIARQLKARNARVTINAVHPGIVKTGIIRAHKGLLTDSIFFIASKLLKSTSQGASTTCYVALSPKTEGISGKYFADCNESKCSSLANDESEAQKLWNNTHALLQKRLRQATI* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00684 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Rops10g00684 330 PANTHER RETINOL DEHYDROGENASE 14 320 - -
Rops10g00684 330 Gene3D - 34 326 - -
Rops10g00684 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 298 IPR036291 -
Rops10g00684 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Rops10g00684 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Rops10g00684 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Rops10g00684 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Rops10g00684 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Rops10g00684 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Rops10g00684 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Rops10g00684 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Rops10g00684 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00684 Rops-Chr10 16709401 16714686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00684 37 248 Acyl Lipid Metabolism Gene Families AT3G55290 30.415 1.24e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00684 - - gmx:100801384 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00684 10 16709401 16714686 Rops10g00684 10 16709401 16714686 ECH
Rops2g04040 2 73729051 73732613 Rops10g00684 10 16709401 16714686 PCT