Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04004 ATGTTTCAGTGCCTTGAAAGAGATGATCCAAAACTACATGGTCCGAGACTCTTCATGGAAGCTGCTGTTTTGGAATCACATGTAGAAAAGCTATTAGTTATTGATGAACTAAGTGAGGTTTTGCAAAAATCCCAACTGGAGGCTATAGAGAAAAACAAACAAACAAACGAAGCAAGGCAAGGACAGTTGCAGGTTGCGCGCGGTTGGTTTGGGAAGACCAATCCTGACATTCCATTCCAACTCTGCAAAACCATAACTTTTCTTTTTTATCATCTTTTGTTCCTTCAATCAATCCTTCTTATTCCTCATTTTGCCTCAATCCCTCTCTTCTCTTCATTAAATATACATTTTCATTCTAATCCAAAGAGTTCTAATTTTTTCCTTCTCTTGACTCTTCTTCCTCCATGTACATTCTCACATCTCTGCCTTGGTTTGGTGCTCATTGTTAAGGGGATCAAAATGACAGGAATTGTTACAGTTGAAGTTAATGATGAGGGGGGAGTGAATGGAATGAATGAGGTTGAGAACCCTTCTTCCTCTAAGGAAACCTTAACTCCAATCAAGTCACCAAGGAGTACATTGAGTCCACAAAGATGTCAAAGTGCTGGTCCAGTTGATGGGGTGGTTGATACCTCCATTGAGCGGCTTTATGAAAATGTCTGTGACATGCAAAGTTCTGATCAATCACCCTCGACACGAAGTTTTGGATCTGATGATGATGAGTCTAGAATCGATTCAGAATTGCACCATCTAGTTGGAGGACAGAGGAGGGAGGTGGAGATGGTCAAAGAGGAAGACGAGACAGGTGGAGATTCTAGCAGTGAAGTATCTTCTAAAATGGGTAGTCCAGCCCATGATAAGAAGTTCGATAAGGTGAATGAGATTCAATCTGCAACTGCAAGTTCTGTTTCTTCAGAAAAACCAAAAAAAGCATCACTTTCACGGTTATCCCCTGAAACATCATCTAAATCAAGAACCATTGGAAAAATTCCTCCTGCCAAACCACCTGTTGAAAGGAAGAATGATAATCCTTTGAGAAAACAAAATACAGGAGTTAGCCACACAGCGAAATCAAAGTATTCTTCTGTTGGAAGATCAGTGTCCCAAAGTCGAGTTGAGAATTCGACTGAATCAGCATTAGATAAGCCTGAGCTGGGACCAGTTTTACTGAAGCAAGCAAGGGAGCTGATTTCATCAGGAGATAATCCACAGAGAGCTCTTGAATTAGCTCTTCAGGCAACGAAGTTGTTAGAGAAGGCTTCTGATGGGAAACCGAGTTTGGAGCTGGTCACGTGTTTACATGTTACAGCAGCAATATATTGCATCTTGGGCCATTACAATGAGGCAATTCCAATTTTAGAGCGCTCAATTGAGATTCCTGTTATTGAGGAAGGCCAACAACATGCCATTGCTAAATTTGCCAGTCGCATGCAACTAGGAGACACCTATGCTATGCTGGGTCAGCTTGAGAATTCAATAATGTGCTACACCGCAGGGTTGGAAGTACAGAAGCAGATTTTGGGAGAAACAGATCCAAGAGTCGGTGAAACTTGTCGGTATGTGGCTGAAGCTAATTTTCAAGCATTGCAATTTGACGAGGCAGAGAGGCTGTGCCAATTAGCTCTTGACATTCATAGAGCAAATGGTTCACCCTCATCTCTTGAAGAGGCAGCTGACAGGAGGCTAATGGGCCTTATATGTGAAACAAATGGAAATCATGAAGCAGCCCTGGAGCATCTTGTTTTAGCCAGCATTACAATGGTAGAAAATGGCCAAGAAGTTGAAGTGGCATCTGTTGACTGCAGCATTGGTGACACATTCTTATCCTTGGCTCGATATGATGAGTCCATCTTGGCATATCAGAAAGCTTTATCAGTTTTCAAGACCCACAAAGGAGAGAATCATCCTGCTGTGGGATCAGTCTTTGTACGTCTGGCTGACTTGTGTAACAAGACATGGAAGATAAGGGAATCAAAATCATATTGTGAGAGTGCACTTAGAATCTACGAGAATCCCATGCCTGGGGTCCCTCCGGAGGAGGTTGCTAGTGGTCTTATGAATATTTCCGCTATCTATGAGTCAATGAATGAGCTTGAACTGGCACTTAAGTTGCTGCACAAGGCACTAGAGATACATAACAACGCCCCTGGTCAGCAAAGCACAGTAGCAGGGATTGAAGCTCAGATGGGGGTCATGTACTACATGTTGGAGAACTATACTGAATCTTACAATGCTTTCACCAATGCTGTCTCAAAGCTTCGTGCTACTGGAGAGAAGAAATCAGCCTTCTTTGGTATTGTTCTTAATCAAATGGGACTTGCTTGTGTGCAGCTTCACACATTAAGTGAGGCTGCAGAATTATTTGAAGAAGCAAAGATTATCTTTGAACAAGAGTATGGACCCTATCACCCTGAAACGCTTGGGGTATATAGCAATCTTGCTGGCACCTATGATGCAATTGGCAGGCTGGATGACGCAATTGAAATTCTGGAGTACATTGTTGCATTGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGTTGTTGTTGATGAGAAGAGAAGGTTGGATGAGTTGTTAAAGGAAACAGGTAGAGTTCGGAACAGAAAAACCAAGTCACTTGAGATCCTTCTTGATGCCAATGGTCGAACTTTAAACAACCTTTTCATCGAGGCCTCATAG 2679 0.4244 MFQCLERDDPKLHGPRLFMEAAVLESHVEKLLVIDELSEVLQKSQLEAIEKNKQTNEARQGQLQVARGWFGKTNPDIPFQLCKTITFLFYHLLFLQSILLIPHFASIPLFSSLNIHFHSNPKSSNFFLLLTLLPPCTFSHLCLGLVLIVKGIKMTGIVTVEVNDEGGVNGMNEVENPSSSKETLTPIKSPRSTLSPQRCQSAGPVDGVVDTSIERLYENVCDMQSSDQSPSTRSFGSDDDESRIDSELHHLVGGQRREVEMVKEEDETGGDSSSEVSSKMGSPAHDKKFDKVNEIQSATASSVSSEKPKKASLSRLSPETSSKSRTIGKIPPAKPPVERKNDNPLRKQNTGVSHTAKSKYSSVGRSVSQSRVENSTESALDKPELGPVLLKQARELISSGDNPQRALELALQATKLLEKASDGKPSLELVTCLHVTAAIYCILGHYNEAIPILERSIEIPVIEEGQQHAIAKFASRMQLGDTYAMLGQLENSIMCYTAGLEVQKQILGETDPRVGETCRYVAEANFQALQFDEAERLCQLALDIHRANGSPSSLEEAADRRLMGLICETNGNHEAALEHLVLASITMVENGQEVEVASVDCSIGDTFLSLARYDESILAYQKALSVFKTHKGENHPAVGSVFVRLADLCNKTWKIRESKSYCESALRIYENPMPGVPPEEVASGLMNISAIYESMNELELALKLLHKALEIHNNAPGQQSTVAGIEAQMGVMYYMLENYTESYNAFTNAVSKLRATGEKKSAFFGIVLNQMGLACVQLHTLSEAAELFEEAKIIFEQEYGPYHPETLGVYSNLAGTYDAIGRLDDAIEILEYIVALREEKLGTANPVVVDEKRRLDELLKETGRVRNRKTKSLEILLDANGRTLNNLFIEAS* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04004 892 Gene3D Tetratricopeptide repeat domain 584 757 IPR011990 GO:0005515
Rops2g04004 892 ProSiteProfiles TPR repeat profile. 597 630 IPR019734 GO:0005515
Rops2g04004 892 Pfam MalT-like TPR region 400 584 IPR041617 -
Rops2g04004 892 MobiDBLite consensus disorder prediction 221 380 - -
Rops2g04004 892 Gene3D Tetratricopeptide repeat domain 366 583 IPR011990 GO:0005515
Rops2g04004 892 MobiDBLite consensus disorder prediction 172 200 - -
Rops2g04004 892 MobiDBLite consensus disorder prediction 346 376 - -
Rops2g04004 892 SUPERFAMILY TPR-like 412 503 IPR011990 GO:0005515
Rops2g04004 892 MobiDBLite consensus disorder prediction 166 205 - -
Rops2g04004 892 Pfam Tetratricopeptide repeat 602 626 IPR019734 GO:0005515
Rops2g04004 892 SUPERFAMILY TPR-like 477 836 IPR011990 GO:0005515
Rops2g04004 892 Coils Coil 890 892 - -
Rops2g04004 892 Pfam Tetratricopeptide repeat 766 838 - -
Rops2g04004 892 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 204 880 - -
Rops2g04004 892 ProSiteProfiles TPR repeat profile. 682 715 IPR019734 GO:0005515
Rops2g04004 892 SMART tpr_5 430 463 IPR019734 GO:0005515
Rops2g04004 892 SMART tpr_5 723 756 IPR019734 GO:0005515
Rops2g04004 892 SMART tpr_5 807 840 IPR019734 GO:0005515
Rops2g04004 892 SMART tpr_5 765 798 IPR019734 GO:0005515
Rops2g04004 892 SMART tpr_5 682 715 IPR019734 GO:0005515
Rops2g04004 892 SMART tpr_5 473 506 IPR019734 GO:0005515
Rops2g04004 892 SMART tpr_5 557 590 IPR019734 GO:0005515
Rops2g04004 892 SMART tpr_5 597 630 IPR019734 GO:0005515
Rops2g04004 892 SMART tpr_5 639 672 IPR019734 GO:0005515
Rops2g04004 892 SMART tpr_5 515 548 IPR019734 GO:0005515
Rops2g04004 892 Coils Coil 695 715 - -
Rops2g04004 892 MobiDBLite consensus disorder prediction 234 272 - -
Rops2g04004 892 MobiDBLite consensus disorder prediction 294 327 - -
Rops2g04004 892 Coils Coil 34 54 - -
Rops2g04004 892 Gene3D Tetratricopeptide repeat domain 758 852 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04004 Rops-Chr2 73212337 73220145 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04004 - - gmx:100813461 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04004 2 73212337 73220145 Rops10g00649 10 15890067 15893855 ECH
Rops2g04004 2 73212337 73220145 Rops2g04004 2 73212337 73220145 ECH
Rops2g04004 2 73212337 73220145 Rops10g00649 10 15890067 15893855 PCT