Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03963 ATGGAATACCACAGTCACAGTTTCAATGACTCTAATAACCTCCAAAAAGGGTCTCTGTCTTCACAACGCAGCCTCGCATCAGTTCCTTCCTTAACCTCTCACACTCATCTTCTAAACCCTTCCACTACTTCTCATAACTGCCTCACAACTCTCAAAGGCCACGCTTCCTACATATCCTCTTTAACCGTTGCTGGAAAATTCCTCTACACAGGTTCATCTGACAGAGAAATCAGATCATGGAACCGTGCCAAATTGGACCCTCAAAAATCAACCTTTAACACAGTAGTTTCTGGAAAGGGTGCAGTTAAGTCCATAGTAGTTCACTCTAACAAGCTTTTCAGTGCTCACCAAGACCACAAAATCCGTGTTTGGAAAATCACGAACCACGAAACTCACCAACAGAAGTACACCCTTTTAGCCACGCTCCCAACGTTTGGTGACCGTGTAACAAAGATTTTGATCCCAAAGAATCACGTTCAGATTCGAAGGCACAGAAAGTGCACTTGGGTTCACCACGTGGACACGGTTTCTGCCTTGGCCTTGTCCAAAGATGGAACCTTGTTGTATTCAGTTTCATGGGATAGGACAATCAAGATTTGGAGAACAAAAGACTTCACATGTTTGGAATCGGTACGAAACGCACACGATGATGCTATAAACGCAGTTGCAGTTTCTGATGATGGGTATGTATACACTGGATCAGCAGATAAGAGAATCAAGGTTTGGAAGAGAAGGGAAGGAGAAAAGAAACACACTTTGGTGGATACTTTAGAGAAACACAACTCGGGGATTAATGCTTTGGTTATTAGCAGTGATGGGACTTTGTTGTATTCTGGTGCATGTGATAGATCCATATTGGTATCTGAGAAGGATGAAAATGGTAACTTGGTGGTGGTGGGTGCGCTTAGGGGGCACACTAAGTCTATATTGTGTTTGGCTGTGGTTTTGGATTTGTTGTGCAGTGGTTCTGAGGATAAAACTATTAGAATTTGGAGAGGTGTTGTTAAAGAGTATTCTTGTTTAGCTGTTTTAGAAGGGCATAGGGGTCCAGTTAAGAGCCTAACTGCAGTGCTTGATCATTGTGACGACCCTTCCGAAGCATCTTTTCTTGTCTATAGTGGAAGTCTGGACTGTGACATTAAGGTTTGGCAGATTTTTGTTCCTCTTCTATAA 1173 0.428 MEYHSHSFNDSNNLQKGSLSSQRSLASVPSLTSHTHLLNPSTTSHNCLTTLKGHASYISSLTVAGKFLYTGSSDREIRSWNRAKLDPQKSTFNTVVSGKGAVKSIVVHSNKLFSAHQDHKIRVWKITNHETHQQKYTLLATLPTFGDRVTKILIPKNHVQIRRHRKCTWVHHVDTVSALALSKDGTLLYSVSWDRTIKIWRTKDFTCLESVRNAHDDAINAVAVSDDGYVYTGSADKRIKVWKRREGEKKHTLVDTLEKHNSGINALVISSDGTLLYSGACDRSILVSEKDENGNLVVVGALRGHTKSILCLAVVLDLLCSGSEDKTIRIWRGVVKEYSCLAVLEGHRGPVKSLTAVLDHCDDPSEASFLVYSGSLDCDIKVWQIFVPLL* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03963 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 210 IPR001680 GO:0005515
Rops2g03963 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 212 243 - -
Rops2g03963 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 51 81 IPR001680 GO:0005515
Rops2g03963 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 331 - -
Rops2g03963 390 SMART WD40_4 250 289 IPR001680 GO:0005515
Rops2g03963 390 SMART WD40_4 162 201 IPR001680 GO:0005515
Rops2g03963 390 SMART WD40_4 88 125 IPR001680 GO:0005515
Rops2g03963 390 SMART WD40_4 295 332 IPR001680 GO:0005515
Rops2g03963 390 SMART WD40_4 204 243 IPR001680 GO:0005515
Rops2g03963 390 SMART WD40_4 337 384 IPR001680 GO:0005515
Rops2g03963 390 SMART WD40_4 44 81 IPR001680 GO:0005515
Rops2g03963 390 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 385 IPR045182 -
Rops2g03963 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 331 IPR001680 GO:0005515
Rops2g03963 390 Gene3D - 160 387 IPR015943 GO:0005515
Rops2g03963 390 Pfam WD domain, G-beta repeat 207 243 IPR001680 GO:0005515
Rops2g03963 390 Pfam WD domain, G-beta repeat 254 286 IPR001680 GO:0005515
Rops2g03963 390 Pfam WD domain, G-beta repeat 46 81 IPR001680 GO:0005515
Rops2g03963 390 Pfam WD domain, G-beta repeat 168 200 IPR001680 GO:0005515
Rops2g03963 390 Pfam WD domain, G-beta repeat 339 383 IPR001680 GO:0005515
Rops2g03963 390 Pfam WD domain, G-beta repeat 300 331 IPR001680 GO:0005515
Rops2g03963 390 FunFam BnaA09g28200D protein 159 247 - -
Rops2g03963 390 SUPERFAMILY WD40 repeat-like 45 385 IPR036322 GO:0005515
Rops2g03963 390 Gene3D - 17 159 IPR015943 GO:0005515
Rops2g03963 390 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Rops2g03963 390 PRINTS G protein beta WD-40 repeat signature 230 244 IPR020472 -
Rops2g03963 390 PRINTS G protein beta WD-40 repeat signature 188 202 IPR020472 -
Rops2g03963 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 252 IPR001680 GO:0005515
Rops2g03963 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 169 200 - -
Rops2g03963 390 CDD WD40 47 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03963 Rops-Chr2 72570998 72572388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03963 162 385 Miscellaneous Gene Families AT5G08390 23.684 2.63e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03963 - - gmx:100801906 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03963 2 72570998 72572388 Rops10g00623 10 15318062 15319388 ECH
Rops2g03963 2 72570998 72572388 Rops2g03963 2 72570998 72572388 ECH
Rops2g03963 2 72570998 72572388 Rops10g00623 10 15318062 15319388 PCT