Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00623 ATGGAATACCAACGATCTTATAGTGCCTCTTCCTCATCTCATCACTCTAACCACCACCAACCCCTGACTTCACAACGCAGCCTTGCCTCAGTTTCTTCCCTTAACAGCCACCACAACCACCCTTCCACCACCACCTACCACCACTGCCTCACAACCCTCAAAGGCCACACATCCTACATATCCTCTCTTACCCTCTCTGGCAAATTCCTCTACACAGGTTCATCTGACAGAGAAATCAGATCCTTGAACCGCACCCCTTTTAACTACCCTGCTGAAAATTCAACCACAACCAACAAAGTACTCGCTGGAAAGGGTGCTGTGAAGTCCTTAGTAATTCAATCAGACAAGCTTTTCAGTGCTCACCAAGACCACAAAATCAGGGTTTGGAAAATCAGCACCAACCAAGAACATGACCAACAAAGGCACACTCATTTAGCCACACTCCCAACACTTGGTGACCGTGCATCCAAGGTTTTGATCCCAAAGAACCATGTTCAAATTCGAAGACACAAAACATGCACGTGGGTCAATCACGTTGACACGGTTTCAGCTCTTGCCTTGTCCAAAGATGGAACCTTGTTGTACTCAGTTTCATGGGACAGGACAATCAAAATCTGGAGAACCAAAGACTTCACTTGCTTGGAATCAGTGGCCAACGCACATGATGATGCCATAAATGCGGTTGCAGTTTCCTACGATGGTCGTGTCTACACCGGATCAGCAGATAAAAAAATTAAAGTGTGGAAAAAATTCCAAGGTGAAAAGAAACACACCCTGGTGGACACTTTGGAAAAACATAACTCTGGGATCAATGCCTTGGGTCTTAGCACTGATGAATCTCTTCTATATTCGGGTGCTTGTGATAGGTCTATATTGGTTTGGGAGAAGATTGAGGAAGAAGATGATGGGAAAATGGTGGTGATTGGTGCTTTGAGGGGACACACAAATTCTATATTGTGTTTGGCTGTTGTGTTGGATTTGGTGTGTAGTGGTTCTGCTGATAAAACCATTAGAATTTGGAGAGGTGTTGATAGAGAATATTCTTGTTTGGCTGTTTTAGAAGGGCATATGGGTTCAATTAAGTGCTTAACTGCAGTGGCTGAACATTGTAACCCATCTGAGTCTGAAGCTTCTTTTCTAGTCTATAGTAGCAGTTTGGACTGTGACATTAAGGTGTGGCAGATTTTTGTTCCTGCTATCTAA 1203 0.4397 MEYQRSYSASSSSHHSNHHQPLTSQRSLASVSSLNSHHNHPSTTTYHHCLTTLKGHTSYISSLTLSGKFLYTGSSDREIRSLNRTPFNYPAENSTTTNKVLAGKGAVKSLVIQSDKLFSAHQDHKIRVWKISTNQEHDQQRHTHLATLPTLGDRASKVLIPKNHVQIRRHKTCTWVNHVDTVSALALSKDGTLLYSVSWDRTIKIWRTKDFTCLESVANAHDDAINAVAVSYDGRVYTGSADKKIKVWKKFQGEKKHTLVDTLEKHNSGINALGLSTDESLLYSGACDRSILVWEKIEEEDDGKMVVIGALRGHTNSILCLAVVLDLVCSGSADKTIRIWRGVDREYSCLAVLEGHMGSIKCLTAVAEHCNPSESEASFLVYSSSLDCDIKVWQIFVPAI* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00623 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 295 IPR001680 GO:0005515
Rops10g00623 400 CDD WD40 49 394 - -
Rops10g00623 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 218 249 - -
Rops10g00623 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 175 206 - -
Rops10g00623 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 295 - -
Rops10g00623 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 340 - -
Rops10g00623 400 MobiDBLite consensus disorder prediction 1 44 - -
Rops10g00623 400 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 395 IPR045182 -
Rops10g00623 400 Pfam WD domain, G-beta repeat 219 249 IPR001680 GO:0005515
Rops10g00623 400 Pfam WD domain, G-beta repeat 348 393 IPR001680 GO:0005515
Rops10g00623 400 Pfam WD domain, G-beta repeat 260 294 IPR001680 GO:0005515
Rops10g00623 400 Pfam WD domain, G-beta repeat 49 80 IPR001680 GO:0005515
Rops10g00623 400 Pfam WD domain, G-beta repeat 309 340 IPR001680 GO:0005515
Rops10g00623 400 Pfam WD domain, G-beta repeat 175 206 IPR001680 GO:0005515
Rops10g00623 400 Gene3D - 164 252 IPR015943 GO:0005515
Rops10g00623 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 340 IPR001680 GO:0005515
Rops10g00623 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 258 IPR001680 GO:0005515
Rops10g00623 400 SMART WD40_4 304 341 IPR001680 GO:0005515
Rops10g00623 400 SMART WD40_4 168 207 IPR001680 GO:0005515
Rops10g00623 400 SMART WD40_4 346 394 IPR001680 GO:0005515
Rops10g00623 400 SMART WD40_4 256 295 IPR001680 GO:0005515
Rops10g00623 400 SMART WD40_4 94 130 IPR001680 GO:0005515
Rops10g00623 400 SMART WD40_4 46 83 IPR001680 GO:0005515
Rops10g00623 400 SMART WD40_4 210 249 IPR001680 GO:0005515
Rops10g00623 400 FunFam BnaA09g28200D protein 165 253 - -
Rops10g00623 400 SUPERFAMILY WD40 repeat-like 48 394 IPR036322 GO:0005515
Rops10g00623 400 Gene3D - 9 160 IPR015943 GO:0005515
Rops10g00623 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 216 IPR001680 GO:0005515
Rops10g00623 400 Gene3D - 253 398 IPR015943 GO:0005515
Rops10g00623 400 PRINTS G protein beta WD-40 repeat signature 236 250 IPR020472 -
Rops10g00623 400 PRINTS G protein beta WD-40 repeat signature 194 208 IPR020472 -
Rops10g00623 400 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00623 Rops-Chr10 15318062 15319388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00623 151 364 Miscellaneous Gene Families AT5G08390 21.053 4.15e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00623 - - gmx:100777242 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03963 2 72570998 72572388 Rops10g00623 10 15318062 15319388 ECH
Rops10g00623 10 15318062 15319388 Rops10g00623 10 15318062 15319388 ECH
Rops2g03963 2 72570998 72572388 Rops10g00623 10 15318062 15319388 PCT