Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03944 ATGAAGAGAGCAAGAACAACGGGAAAGTTTGACACGTTCGTCTCTCTCACCAGGCAACGATCCTTTCAGATTCTCTTCACCATTGCCCTCTTATACATCCTCTTATTCACCCTCGAAATCCCCTTCCTCTTCAGAACCCCAACAACTCCCTCCAATAGACTCACCCTCGAAGAGGAACCACTCCAACGAGTCCCACTCAACTCGGAACCACCCACTCATACCCAACAACACCACAACGTTGTCGTGTCAGGGTTGGCCCTAAACGACGCCGCGTTCGATTCGGAGGTTTATCGAACAGCATGCCGTCTGGGGAAAACGGTTTGGAAGGAGCTAGAATCATGGGACACCCGAAGCTTCATCACGAAACCCGATAACCTATCCGGGTCGTGCCCGATGTCCGTTTCGGTATCCGGGTCGGACTTTTTGCGGCGCGGGAGTGTGATGGTGATTCCTTGTGGGTTGACGTTGGGGTCCCACATAACGGTGATTGGGAAACCGTTAACGGCGACGGGGAAAGCGTGTCATTTCGTGATGGAGTTGCAGGGTTTGAAGACGGTTGAGGGAGAGGACCCACCTAGGATCTTGCATTTCAATCCGAGGTTGAAAGGGGATTGGAGTGGGAAGCCAGTGATTGAGCTCAACACGTGTTATCGCATGCAGTGGGGTTCTGCTTTGCGTTGTGCTGGTTGGAAATCAAGGGCTGATGAAGATACTGTTGATGGGCTGGTGAAGTGTGAGAAGTGGATTGGGGGTGAGGATAGGGATGCAGTGGAGTCTAAATCAGCATGGTGGTTGAAGAGACTGATAGGCCGGACGAAAACAGTAACAATTGATTGGCCATTCCCATTTTCTGAGAACAAGCTATTTGTTCTTACCCTTAGTGCTGGATTGGAGGGCTATCATTTTAATGTTGATGGGAGGCATGTGACCTCTTTTCCTTATCGCACTAGCTTTGCTCTGGAGGATGCCACTGGACTTACTTTGAGTGGAGATATCGATGTCCACTCTATATTTGTTGGCTCCTTGCCTTCATCGCATCCTAGTATTTCCCCAAAGCAGCATCTCGAATTTTCAACCAGATGGTGTGCCCCAACGCTTCCTGACTCTGGTGTGGAATTTTTCATTGGCATCCTCTCAGCTGGAAACCATTTTCCTGAGCGGATGGCTGTAAGGAAGTCATGGATGCAGCATAGCCTTATCAAATCATCAAAAGTGGTGGCTCGTTTCTTTGTAGCACTGCACCCGAGAAAAGAAGTTAATGCAGAGTTGAAGAAGGAAGCAGAATTTTTTGGTGATATTGTTATAGTGCCTTACATGGATAACTATGACCTTGTTGTGTTGAAAACTCTGGCCATATGTGAATATGGGGTTCACACAGTATCTGCGGAGTATATCATGAAAGGTGATGATGACACTTTTGTAAGAGTGGATGCTGTTATAAATGAAGCAAGGAAAGTTCCGGATTCTATGAGTTTTTATATAGGGAACATTAATTACCACCACAAACCCTTGCGCCATGGTAAATGGGCTGTGACATACGAGGAGTGGCCAGAGGAGGATTACCTACCCTATGCTAATGGACCGGGTTATATTTTGTCTTCTGATATTGCACGCTACGTTGTATCAGAATTTGAGATGCATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGCATGGGAATGTGGGTAGAGCAATTTAACCGCACCAAACCAGTATACTATTCGCATAGCTTAAAGTTCTGCCAATTTGGGTGTATAGAAGATTATTACACAGCTCATTACCAATCACCTAGACAGATGATGTGCCTTTGGGATAAATTGCAGCAGCAAACAAGGCCTCAGTGCTGCAACATGAGATAA 1860 0.4656 MKRARTTGKFDTFVSLTRQRSFQILFTIALLYILLFTLEIPFLFRTPTTPSNRLTLEEEPLQRVPLNSEPPTHTQQHHNVVVSGLALNDAAFDSEVYRTACRLGKTVWKELESWDTRSFITKPDNLSGSCPMSVSVSGSDFLRRGSVMVIPCGLTLGSHITVIGKPLTATGKACHFVMELQGLKTVEGEDPPRILHFNPRLKGDWSGKPVIELNTCYRMQWGSALRCAGWKSRADEDTVDGLVKCEKWIGGEDRDAVESKSAWWLKRLIGRTKTVTIDWPFPFSENKLFVLTLSAGLEGYHFNVDGRHVTSFPYRTSFALEDATGLTLSGDIDVHSIFVGSLPSSHPSISPKQHLEFSTRWCAPTLPDSGVEFFIGILSAGNHFPERMAVRKSWMQHSLIKSSKVVARFFVALHPRKEVNAELKKEAEFFGDIVIVPYMDNYDLVVLKTLAICEYGVHTVSAEYIMKGDDDTFVRVDAVINEARKVPDSMSFYIGNINYHHKPLRHGKWAVTYEEWPEEDYLPYANGPGYILSSDIARYVVSEFEMHKLRLFKMEDVSMGMWVEQFNRTKPVYYSHSLKFCQFGCIEDYYTAHYQSPRQMMCLWDKLQQQTRPQCCNMR* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03944 619 FunFam Hydroxyproline O-galactosyltransferase GALT2 254 338 - -
Rops2g03944 619 SMART Gal_bind_lectin_2 150 339 IPR001079 GO:0030246
Rops2g03944 619 Pfam Galactoside-binding lectin 147 338 IPR001079 GO:0030246
Rops2g03944 619 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 306 569 IPR002659 GO:0006486|GO:0016020|GO:0016758
Rops2g03944 619 SUPERFAMILY Concanavalin A-like lectins/glucanases 148 340 IPR013320 -
Rops2g03944 619 Gene3D - 146 338 - -
Rops2g03944 619 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 146 340 IPR001079 GO:0030246
Rops2g03944 619 CDD GLECT 150 338 IPR001079 GO:0030246
Rops2g03944 619 Pfam Galactosyltransferase 387 566 IPR002659 GO:0006486|GO:0016020|GO:0016758
Rops2g03944 619 Gene3D - 369 616 - -
Rops2g03944 619 FunFam Hydroxyproline O-galactosyltransferase 364 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03944 Rops-Chr2 72224975 72228831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03944 1 619 Glycosyltransferase AT1G74800 61.435 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03944 K20843 - gmx:100800292 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03944 2 72224975 72228831 Rops2g03944 2 72224975 72228831 ECH
Rops2g03944 2 72224975 72228831 Rops10g00588 10 14858426 14861882 PCT