Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00588 ATGACGAGAAAGTTCGAAACTTTTTTACGAAAAAGATCGATTCAGTTTCTGATCGGAGTTGCACTCTTATACCTCGTGTTAGTCACAGTAGAAATCCCTTTCGTTTTCAAAACCGATTTCGCCACGGTTACCACTCGTCCCCCAAGGCTTCTCACCGAGGAGGACCCACAACAACGACACGCTCCAACTCGTCCCTTCAAAACCGTGTCAAACGCCAACGCACCGAGTCAACTCACCCACCGGAGAATCGTTTCAAGTTTGCTCCTAAACGACGCCGCTTTCGACCCAAACGTCAACGACGGTTCCTCAGAGCTCTACCAGCTCGCGAAGCAAGCACGTGAGGTTGGGTCCTACCTCTGGAAAGACCTTAAAAACCCGCGAACCGGTTCAAGGAAACCCGAGAAACAAACCGGGTCGTGTCCCGGTTCGGTTTTTGTTTCTGGGTCGAATTTCACCGGCGTGGCGGCGCTTCCTTGTGGGCTCACATTGGGGTCCCATGTAACGGTCGTTGGGAAGCCGTTAACTGCGCGGCCGGATTTTGAGTCGAAGATAACGGCGGTTAAGGACGGTGATGAACCGGTGATGGTTTCGCAGTTTGTGGTGGAGTTGCAAGGGTTGAAAACCGTGGAGAATGAAGACCCTCCTAGGGTTTTTCACTTCAACCCAAGGTTGAAGGGTGATTGGAGTGGTAAACCAGTGATTGAACTCAACACGTGTTATAGAATGCAATGGGGTTCTGCTCTTAGGTGTGATGGTTGGAAATCAAAGGCTGATGAAGACACTGTTGATGGGAATGTGAAGTGTGAGAAGTGGATTAGAGATGATGAAGATCGTGCGGAGGAGTTAAAGGCAACGTGGTGGTTGAATAGATTGATAGGTAGAACGAAGAAAGTGACAATTGATTGGCCATTCCCGTTTTCTGAGAACAAGCTGTTTGTTCTTACTCTTAGTGCTGGGTTGGAGGGGTATCATGTTACTGTTGATGGGAGGCATGTGGCTTCGTTTCCTTATCGTCCTGGATTTACTCTTGAGGATGCAACTGGGCTTTCTTTGAGTGGAGACATTGATGTCCACTCTATATTTGCAGCTTCTTTGCCTTCAACACATCCCAGTTTTGATCCACAGCGGCATCTTGAATTCTCAACCAGATGGCATGCCCCGCCATTTCCTGACACTGGTGTAGAATTGTTCATCGGTGTACTCTCGGCTGGAAACCATTTTGCCGAGCGAATGGCTGTAAGGAAGTCATGGATGCAACATAGGCTCGTCAAATCTGCAGTTGTGGTTGCTCGTTTCTTTGTAGCACTGCATGCAAGACAAGAAGTTAATGTAGAGTTGAAGAAGGAAGCAGATTTTTTTGGTGATATTGTTATAGTGCCTTATTTGGATAACTACGACCTTGTTGTGTTGAAAACAGTGGCTATATGTGAATATGGGGTTCATACAGTTTCCGCTAAGTATATCATGAAAGGTGATGATGACACCTTTGTAAAAGTGGATGCTGTTATCAATGAAGCAAGGAAGGTTCCGGATGATCAAAGCTTTTACATTGGGAACATAAATTACTACCACAAACCTTTGCGCTATGGTAAATGGGCTGTGACATACGAGGAGTGGCCAGAAGAGGATTACCCACCCTATGCTAATGGACCGGGTTATATTTTGTCATCAGATATTGCACGCTACATTGTATCTGAATTTGAGATGCATAGATTAAGGTTGTTCAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAATTTAACAGCTCAAAACCAGTAAAATACTTGCATAGCTTTAATTTCTGCCAGTTTGGTTGCATAGAAGGCTATTACACAGCCCATTACCAATCACCTAGGCAAATGATGTGTCTATGGGACAAATTCCAAAGGCAGACAAGTCCTCAATGTTGCAATATGAGATGA 1929 0.4567 MTRKFETFLRKRSIQFLIGVALLYLVLVTVEIPFVFKTDFATVTTRPPRLLTEEDPQQRHAPTRPFKTVSNANAPSQLTHRRIVSSLLLNDAAFDPNVNDGSSELYQLAKQAREVGSYLWKDLKNPRTGSRKPEKQTGSCPGSVFVSGSNFTGVAALPCGLTLGSHVTVVGKPLTARPDFESKITAVKDGDEPVMVSQFVVELQGLKTVENEDPPRVFHFNPRLKGDWSGKPVIELNTCYRMQWGSALRCDGWKSKADEDTVDGNVKCEKWIRDDEDRAEELKATWWLNRLIGRTKKVTIDWPFPFSENKLFVLTLSAGLEGYHVTVDGRHVASFPYRPGFTLEDATGLSLSGDIDVHSIFAASLPSTHPSFDPQRHLEFSTRWHAPPFPDTGVELFIGVLSAGNHFAERMAVRKSWMQHRLVKSAVVVARFFVALHARQEVNVELKKEADFFGDIVIVPYLDNYDLVVLKTVAICEYGVHTVSAKYIMKGDDDTFVKVDAVINEARKVPDDQSFYIGNINYYHKPLRYGKWAVTYEEWPEEDYPPYANGPGYILSSDIARYIVSEFEMHRLRLFKMEDVSMGMWVEQFNSSKPVKYLHSFNFCQFGCIEGYYTAHYQSPRQMMCLWDKFQRQTSPQCCNMR* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00588 642 MobiDBLite consensus disorder prediction 48 71 - -
Rops10g00588 642 CDD GLECT 154 361 IPR001079 GO:0030246
Rops10g00588 642 Gene3D - 277 361 - -
Rops10g00588 642 SMART Gal_bind_lectin_2 157 362 IPR001079 GO:0030246
Rops10g00588 642 FunFam Hydroxyproline O-galactosyltransferase 387 630 - -
Rops10g00588 642 FunFam Hydroxyproline O-galactosyltransferase GALT4 152 270 - -
Rops10g00588 642 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 153 363 IPR001079 GO:0030246
Rops10g00588 642 Pfam Galactosyltransferase 409 589 IPR002659 GO:0006486|GO:0016020|GO:0016758
Rops10g00588 642 Pfam Galactoside-binding lectin 155 361 IPR001079 GO:0030246
Rops10g00588 642 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 375 590 IPR002659 GO:0006486|GO:0016020|GO:0016758
Rops10g00588 642 Gene3D - 145 270 - -
Rops10g00588 642 SUPERFAMILY Concanavalin A-like lectins/glucanases 155 361 IPR013320 -
Rops10g00588 642 FunFam Hydroxyproline O-galactosyltransferase GALT2 277 361 - -
Rops10g00588 642 Gene3D - 391 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00588 Rops-Chr10 14858426 14861882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00588 5 642 Glycosyltransferase AT1G74800 63.705 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00588 K20843 - gmx:100795908 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00588 10 14858426 14861882 Rops10g00588 10 14858426 14861882 ECH
Rops2g03944 2 72224975 72228831 Rops10g00588 10 14858426 14861882 PCT