Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02024 ATGCATCGTGTACCAGCCACCTTGTGCCGCAAGATCGTTCGTCCAGCATGTGACGTGTTCATAAACCACCGTGGAATTGACACAAAGAAGAACGTGGCTGGTTTGCTCTATGATTGTTTAACGAAGATGGGAGTGAGGTCTTTCTTGGATAGCATGAATATGAAACCTGGGGATAAGTTGTTTGACCATATTGATAGGGCTATTCTGGGGTGTAAGGTTGGTGTTGCGGTGTTTTCTCCACGTTATTGTGATTCCTATTTCTGTCTCCATGAGCTCTCTCTTCTCATGGAGTCAAAGAAGAGGGTTGTTCCCATTTTCTATGATGTTAAGCCTTCGCAGCTTGTGGTCAAGGACCATGGAACTTGTTCTGCTAAAGAGCTTCGAAGATTCCGTTCTGCACTCGAGGAAGCTAAATATACTGTTGGATTAACCTTCGATCCTTTGAATGGGGACTGGTCGGAGCTGTTAATGGATGCTTCGGATGCAGTGATCATGAACTTGCAAGAGATAGAAGAAGAGCAAAAGCTCATGCAGAAGAAACTGTTGAATAACTGA 555 0.4432 MHRVPATLCRKIVRPACDVFINHRGIDTKKNVAGLLYDCLTKMGVRSFLDSMNMKPGDKLFDHIDRAILGCKVGVAVFSPRYCDSYFCLHELSLLMESKKRVVPIFYDVKPSQLVVKDHGTCSAKELRRFRSALEEAKYTVGLTFDPLNGDWSELLMDASDAVIMNLQEIEEEQKLMQKKLLNN* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02024 184 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 138 IPR035897 -
Rops2g02024 184 Coils Coil 167 184 - -
Rops2g02024 184 Pfam TIR domain 18 114 IPR000157 GO:0007165
Rops2g02024 184 ProSiteProfiles TIR domain profile. 15 134 IPR000157 GO:0007165
Rops2g02024 184 SMART till_3 16 149 IPR000157 GO:0007165
Rops2g02024 184 Gene3D - 13 178 IPR035897 -
Rops2g02024 184 PANTHER COP1-INTERACTING PROTEIN-RELATED 16 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02024 Rops-Chr2 32213802 32214609 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02024 14 146 Miscellaneous Gene Families AT1G57670 31.081 5.01e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02024 - - gmx:100798207 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g02024 2 32213802 32214609 Rops11g00519 11 7145872 7146737 PCT