Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00519 ATGCAGCGTTTGCCAGCCAAGTTGTGCCGCAAAATCATTCGTCCAACAATTGATGTTTTCATAAATCACCGTGGAATCGACACAAAGAGGAACGTGGCGGGGTTGTTGTACCATGGTCTTACGAGGATGAGAGTGAGGTCCTTCTTGGATAGCATGAACATGAAACCAGGGGACAAGCTTTTTGATCATATTGATAGGGCCATTCTAGGTTGCAAGGTTGGTGTTGCTGTGTTCTCTCCTCGTTATTGTGACTCATATTTTTGTCTCCATGAGCTTTCTCTTCTCATGGAGTCCAAGAAGAGGGTCGTCCCTATCTTCTACGACGTGAAACCGTCGCAACTTGCGGTCAAAGACAACGGAACATGCCCTCATAAAGAGCTTCAAAGGTTCACTTTAGCACTTGAGGAAGCAAAAAACACTGTGGGATTAACCTTTGATTCTTTGAATGGGGACTGGTCAGAATTGCTGAGGGATGCTTCGGATGCAGTGATCATGAACTTGCTGGAGGTAGAGGAAGAAAGGAAGAACATGAATGCTTCAAAGGCCATCATTGGAAAACTAAAATATTAA 570 0.4439 MQRLPAKLCRKIIRPTIDVFINHRGIDTKRNVAGLLYHGLTRMRVRSFLDSMNMKPGDKLFDHIDRAILGCKVGVAVFSPRYCDSYFCLHELSLLMESKKRVVPIFYDVKPSQLAVKDNGTCPHKELQRFTLALEEAKNTVGLTFDSLNGDWSELLRDASDAVIMNLLEVEEERKNMNASKAIIGKLKY* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00519 189 SMART till_3 16 162 IPR000157 GO:0007165
Rops11g00519 189 Pfam TIR domain 18 123 IPR000157 GO:0007165
Rops11g00519 189 PANTHER COP1-INTERACTING PROTEIN-RELATED 17 176 - -
Rops11g00519 189 Gene3D - 14 171 IPR035897 -
Rops11g00519 189 ProSiteProfiles TIR domain profile. 15 160 IPR000157 GO:0007165
Rops11g00519 189 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 142 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00519 Rops-Chr11 7145872 7146737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00519 14 146 Miscellaneous Gene Families AT1G57670 30.405 4.47e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00519 - - gmx:100798207 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00519 11 7145872 7146737 Rops11g00519 11 7145872 7146737 ECH
Rops2g02024 2 32213802 32214609 Rops11g00519 11 7145872 7146737 PCT