Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01359 ATGCCTGGTTTTGTTGTTGGTAAGAAGAGATTTACAGAGCCAAATATGTGTTCTTCCAATTTGGCCAATCATGATAAATCAACTCTTTCAAAAAGTGTGAGGTTTGAGGATCTGGATGATGATGGTAGCCCCATTCTTCCCGGGCTTCCTGATGATGTTTCAAAGTATTGCCTTGCACTTGTGCCTCATTCTAACTTCCCAGCTATGGGTGGTGTCTGTAAGAGATGGAGGCGCTTTATTCAAAGCGAAGAATTCATAACTGTGAGAAAGTTGGTTGGGAAGCTTGAGGAATGGCTTTATATCTTAACAGCAGATAGTGAAGGAAAAGAATGTCACTGGGAGGTTATAGATTGTCAGGGTCATAATCGCGGATCCCTTCCACCAATGCCTGGTCCAGAAAAGGCTGAGTTTGGGGTAGTGGTTCTTAATGGAAAGCTTCTTGTTATGGCTGGCTATTCATCAATTCATGGAACTGCCTTTGCCTCAGCAGAGGTTTACCAATATAATTCTTTCCTCAATAGCTGGAGCAGATTGTCAAACATGAATGTGGCTCGGTATGACTTTGCTTGTGCAGAAGTCAATGGCTTGGTTTATGCAGTTGGAGGCTATGATGCAAATGGTGACAGTCTCTCCAGTGCTGAGGTGTATGACCCAGATACTGATAAGTGGACATTGATTGAGAGCCTTCGTCGCCCAAGATGGGGTTGCTTTGCTTGTGGATTTGAGGGGAAGCTCTATGTAATGGGTGGAAGGTCAAGCTTTACAATTGGAAATTCCAAGTTTGTTGATGTTTACAACCCTGAGAAGCATGGCTGGTGTGAGATGAAAAATGGCTGTGTGATGGTAACTGCTCATGCCGTACTAGGAAAGAAGTTGTTCTGTATGGAGTGGAAGAACCAGCGGAAGTTAGCAATATTCAATCCAGAGGACAATTCATGGAAAATGGTACCAGTCCCTTTGACAGGGAGTTCAAGAATTGGCTTTAAATTTGGGATACTAGATGGTAAGCTTTTGCTGTTCTCACTGCAGGAAGATCCTACATATAGGACTTTGTTGTATGATCCAAATGCAGCACCAGGGGCTGAGTGGCAGACTTCAGAGATAAAACCATCTGGTTTGTGCTTGTGCTGTGTAACTATCAAAGCCTGA 1149 0.4352 MPGFVVGKKRFTEPNMCSSNLANHDKSTLSKSVRFEDLDDDGSPILPGLPDDVSKYCLALVPHSNFPAMGGVCKRWRRFIQSEEFITVRKLVGKLEEWLYILTADSEGKECHWEVIDCQGHNRGSLPPMPGPEKAEFGVVVLNGKLLVMAGYSSIHGTAFASAEVYQYNSFLNSWSRLSNMNVARYDFACAEVNGLVYAVGGYDANGDSLSSAEVYDPDTDKWTLIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDVYNPEKHGWCEMKNGCVMVTAHAVLGKKLFCMEWKNQRKLAIFNPEDNSWKMVPVPLTGSSRIGFKFGILDGKLLLFSLQEDPTYRTLLYDPNAAPGAEWQTSEIKPSGLCLCCVTIKA* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01359 382 Pfam F-box domain 48 84 IPR001810 GO:0005515
Rops2g01359 382 Pfam Kelch motif 233 277 IPR011498 GO:0005515
Rops2g01359 382 SUPERFAMILY F-box domain 43 86 IPR036047 GO:0005515
Rops2g01359 382 CDD F-box_AtAFR-like 45 89 - -
Rops2g01359 382 Gene3D - 84 380 IPR015915 GO:0005515
Rops2g01359 382 PANTHER OS02G0202900 PROTEIN 9 378 IPR045887 -
Rops2g01359 382 Pfam Kelch motif 136 182 IPR006652 GO:0005515
Rops2g01359 382 Pfam Kelch motif 184 229 IPR006652 GO:0005515
Rops2g01359 382 SMART kelc_smart 196 243 IPR006652 GO:0005515
Rops2g01359 382 SMART kelc_smart 145 195 IPR006652 GO:0005515
Rops2g01359 382 SUPERFAMILY Kelch motif 96 341 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01359 Rops-Chr2 19481497 19485584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01359 49 227 Miscellaneous Gene Families AT4G33900 30.612 5.67e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01359 - - gmx:100815474 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01359 2 19481497 19485584 Rops2g01359 2 19481497 19485584 ECH
Rops11g03725 11 70893067 70896070 Rops2g01359 2 19481497 19485584 PCT