Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03725 ATGCCTGGTTTTGTTGCTGAAAATAATAGATTTACAGAACCAATTATGTGTTTCACCAAATTTGTCAATCATTCACAAAGCAATCATTGTTTAACCTCTAAGGCACTGGATCAAGATGATAGCCCCATTCTACCTGGGCTGCCTGATGATGTGGCAAAGTATTGTCTTGCACTTGTGCCTCGTTCAAACTTCCCAGCTATGGGTGGTGTCTGCAAGAGATGGAGGATGTTTATTCAAAGCAAAGAATTTGTAACTGTGAGAAAATTGGCAGGGATGCTTGAGGAATGGCTCTATTTCTTAACAATGGACAGTGAAGGAAAGGAAAGCCACTGGGAGGTTATGGATTGTCTTGGTCATAAATGCCGATCTCTTCCACCAATGCCTGGTCCAGAAAAGGCTGGGTTTGGAGTGGTGGTTCTTAATGGAAAGCTTCTTGTTGTGGCTGGTTATTCTGCTGTTGATGGAACTGCCTTTGCCTCATCAGAGGTTCACCAATATGATTCTTGCCTCAACAGTTGGAGCAGATTATCAAACATGAATGTGGCTCGTTATGACTTCGCTTGTGCTGAAGTCAATGGCTTGGTTTATGCTGTTGGAGGCTATGGGGTGAATGGTGAAAGTCTCTCAAGTGCTGAGGTGTATGATACAGATACTAACAAGTGGACACTGATAGAGAGCCTTCGTCGCCCAAGATGGGGTTGTTTTGCCTGTGGATTTGAGGGTAAGCTCTATGTCATGGGTGGAAGGTCAAGCTTTACAATTGGAAATTCCAAGTTTGTTGATATATATAGCCCTGAGAAGCACAACTGGTGTGAGATTAAGAATGGCTGTGTTATGGTCACAGCTCATGCAGTATTGGGAAAGAAGTTGTTTTGTATGGAGTGGAAAAACCAAAGGAAATTAGCAATATTCAGTCCAGAGGACAACTCATGGAAAATGGTACCTGTCCCATTGACAGGGAGCTCAAGTATTGGTTTTAGATTTGGGATATTGGATGGAAAGCTTTTGCTATTTCCACTTGAGGCAGAACCTGCTTATCAAACATTGTTATATGATCCAAATGCAGCTCTAGGGTCAGAGTGGCAGACTTCTGATATAAGGCCATCTGGTTTGTGTTTGTGCAGTGTAACAATCAAGGCATGA 1143 0.4269 MPGFVAENNRFTEPIMCFTKFVNHSQSNHCLTSKALDQDDSPILPGLPDDVAKYCLALVPRSNFPAMGGVCKRWRMFIQSKEFVTVRKLAGMLEEWLYFLTMDSEGKESHWEVMDCLGHKCRSLPPMPGPEKAGFGVVVLNGKLLVVAGYSAVDGTAFASSEVHQYDSCLNSWSRLSNMNVARYDFACAEVNGLVYAVGGYGVNGESLSSAEVYDTDTNKWTLIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDIYSPEKHNWCEIKNGCVMVTAHAVLGKKLFCMEWKNQRKLAIFSPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFPLEAEPAYQTLLYDPNAALGSEWQTSDIRPSGLCLCSVTIKA* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03725 380 PANTHER OS02G0202900 PROTEIN 24 376 IPR045887 -
Rops11g03725 380 Gene3D - 81 377 IPR015915 GO:0005515
Rops11g03725 380 Pfam F-box domain 46 83 IPR001810 GO:0005515
Rops11g03725 380 CDD F-box_AtAFR-like 43 87 - -
Rops11g03725 380 Pfam Kelch motif 231 274 IPR011498 GO:0005515
Rops11g03725 380 Pfam Kelch motif 182 227 IPR006652 GO:0005515
Rops11g03725 380 Pfam Kelch motif 133 180 IPR006652 GO:0005515
Rops11g03725 380 SMART kelc_smart 143 193 IPR006652 GO:0005515
Rops11g03725 380 SMART kelc_smart 194 241 IPR006652 GO:0005515
Rops11g03725 380 SMART kelc_smart 242 288 IPR006652 GO:0005515
Rops11g03725 380 SUPERFAMILY Kelch motif 94 338 IPR015915 GO:0005515
Rops11g03725 380 SUPERFAMILY F-box domain 40 115 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03725 Rops-Chr11 70893067 70896070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03725 47 225 Miscellaneous Gene Families AT4G33900 28.497 5.01e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03725 - - gmx:100802912 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03725 11 70893067 70896070 Rops2g01359 2 19481497 19485584 PCT