Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01352 ATGAGAACGAGAAGAGTAGTGGCAAGGATGTGTTCCGATGTAAGGGTTGTGAAGAGAAAGAAGGATATGCATATTCATACTCATATGCCTAAAGAGTCCATCTTTAGCCGGAAAAGGCAGAAGAAATGGCAGGAAAAAACCGCCGGTGAATACGATTTTTTCGAGTCTTTACCGGATGACCTTGTAATCTCCATTTTCTGCAAGCTTAGCTCCACCGCCACTTGCCCTTCCGATTTTGTCAATGTTTTAATCACGTGTAAAAGATTACACAGTTTAGCACTCCATTCTCTTGTATTATCCAAAGCCTCCACAAGAACTTTCTCTGTTAAAGCCAAAGACTGGTGCCATTCGGCACACCAATTCCTCAAACAGTGTGCAGATGCGGGAAACGTTGAAGCCTGTTACACTTTGGGCATGATTCGTTTCTACTGTTTACAAAACAGAGGAAGCGGGGCTTCGTTGATGGCCAAGGCGGCGATAAGCTCTCACGCGCGGGCTTTATACTCGCTCGCCGTTATTCAGTTCAACGGAAGCGGAGGAACCAAAAGCGACAAGGACCTCCGTGCCGGCGTGGCTCTATGCGCCAGAGCCGCCTTCCTCGGCAACATCGATGCGCTCCGTGAGCTTGGCCACTGCTTGCAAGACGGTTACGGTGTCCGACGGAACATCGCTGAGGGGAGGCGATTCTTAATACAGGCCAACGCTCGGGAACTCGCCGCTGTGTTATCCACCGGCGCCACCGCACGACACTGGATGACATGGAACATCAACCCGCAGCTCCGGCATCACCTAGCGGGGCCTGGTTGCCCGCTTCTCAGCGATTTTGGGTGCAACGTGCCGGCGCCGGAGCCCCATCCGGCGAGCCAGTTCATGGCGGAGTGGTTCTCGGTTCGGGGCAGGTCGCCGGGTCCGGGTCTCAGGCTATGCTCACATACGGGTTGTGGCAGACCCGAGACGAGGAAGCACGAGTTTCGGAGATGCTCGGTGTGTGGCTTGGTGAATTATTGCTCACGCGCGTGCCAAGCGCTTGATTGGAAGTTCCGGCACAAGGCGGAGTGCGCCCCCGTGGAACGGTGGCTCGATGAGGAAGGCGAGGACGCCGTTAACGACGACGGAGACGGTGACGGCGAGTTGGTGGTTATGGAGGATAGTTAG 1155 0.5446 MRTRRVVARMCSDVRVVKRKKDMHIHTHMPKESIFSRKRQKKWQEKTAGEYDFFESLPDDLVISIFCKLSSTATCPSDFVNVLITCKRLHSLALHSLVLSKASTRTFSVKAKDWCHSAHQFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGNIDALRELGHCLQDGYGVRRNIAEGRRFLIQANARELAAVLSTGATARHWMTWNINPQLRHHLAGPGCPLLSDFGCNVPAPEPHPASQFMAEWFSVRGRSPGPGLRLCSHTGCGRPETRKHEFRRCSVCGLVNYCSRACQALDWKFRHKAECAPVERWLDEEGEDAVNDDGDGDGELVVMEDS* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01352 384 ProSiteProfiles Zinc finger MYND-type profile. 311 353 IPR002893 -
Rops2g01352 384 CDD F-box_SF 55 93 - -
Rops2g01352 384 FunFam Predicted protein 301 358 - -
Rops2g01352 384 MobiDBLite consensus disorder prediction 363 384 - -
Rops2g01352 384 Pfam MYND finger 314 353 IPR002893 -
Rops2g01352 384 SUPERFAMILY HCP-like 116 233 - -
Rops2g01352 384 SUPERFAMILY F-box domain 46 110 IPR036047 GO:0005515
Rops2g01352 384 Gene3D Tetratricopeptide repeat domain 94 252 IPR011990 GO:0005515
Rops2g01352 384 SUPERFAMILY HIT/MYND zinc finger-like 308 358 - -
Rops2g01352 384 Gene3D - 304 357 - -
Rops2g01352 384 PANTHER MYND DOMAIN-CONTAINING 19 370 IPR044508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01352 Rops-Chr2 19316421 19318222 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01352 - - gmx:100798174 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01352 2 19316421 19318222 Rops2g01352 2 19316421 19318222 ECH
Rops11g03710 11 70742244 70743942 Rops2g01352 2 19316421 19318222 PCT