Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01349 ATGAAGAGAGTGCAGACATTGTGCTGGTGCCTCTTTCTGTTGGTGCTATGTGGCACTGTGAAGGGAGCAGATTTGGCTGCAAAGTGCACCCAAATGGTTGAGAAGGTGATTCCCTGTTTGAACTTTGTTACTGGCCAAGCAGAAGTGCCTACGAAGGATTGTTGCGACGCATCGACGAAAATGAAGGAGACCAATCCTGAGTGCTTGTGTTACATAATTCAGCAGACACATAAGGGTAGCCCAGAGGTCAAAAGCTTCGGTATTCAAGAGGCTAGGCTCCTTCGTCTTCCTACTGCATGTAACTTAAAGAATGCCAGCATCACTCACTGTCCTAAGCTTCTGGGTCTATCTCCAACCTCCCCAGACGCAGCTATCTTCACGAATGCTTCGTTGAAAACTGCTCCAACTTCAAGCGGAGGAACCACACCACCGATCTCAGAGAACCAGAAGGTCTCCAATGGAAACATTCTTAGACCTGCTCTAATGGCAGACATAATGATAGTGGGTTGGGCCATTCTTCTCTTCGTGATTCCAACCGGAATTGTCAGCATCTACACAGGATGA 564 0.477 MKRVQTLCWCLFLLVLCGTVKGADLAAKCTQMVEKVIPCLNFVTGQAEVPTKDCCDASTKMKETNPECLCYIIQQTHKGSPEVKSFGIQEARLLRLPTACNLKNASITHCPKLLGLSPTSPDAAIFTNASLKTAPTSSGGTTPPISENQKVSNGNILRPALMADIMIVGWAILLFVIPTGIVSIYTG* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01349 187 CDD AAI_LTSS 38 102 - -
Rops2g01349 187 Gene3D - 25 107 IPR036312 -
Rops2g01349 187 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 110 IPR036312 -
Rops2g01349 187 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 18 147 IPR043325 -
Rops2g01349 187 SMART aai_6 29 110 IPR016140 -
Rops2g01349 187 Pfam Probable lipid transfer 22 110 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01349 Rops-Chr2 19239099 19241229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01349 28 174 Acyl Lipid Metabolism Gene Families AT1G27950 45.752 7.88e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01349 - - gmx:100799403 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01349 2 19239099 19241229 Rops2g01349 2 19239099 19241229 ECH
Rops11g03706 11 70630451 70633477 Rops2g01349 2 19239099 19241229 PCT