Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03706 ATGAAGAAGAAGCAGCAGCAAAGTGGAGCTCAATTCACGTGCTTGTTCTTTTTTGTGCTGATCGTGGGGGGTTCAATCAAAATAGCAAGGGGTGCTGATGATGATTTGGCTAAGAAGTGTGGTGAGGTGGTTCAGAAGGTGCTTCCATGTTTGGACTTTGCTACGGGGAAGCAACAGACACCGAAGAAGGAATGTTGTGATGCAGCTACGAATATAAGGGACACTGCTCCAGAGTGCTTGTGTTACATCATTCAACAAACACATAAGGGTGGCCAACAGTTCAAAAGCTTGGGTATTCAAGAGGACAAACTGCTTCAGCTCCCTTCTGCTTGTAACGTCAAAAACGCAAACACCAGTGACTGTCCCAAGCTTCTGGGTCTATCTCCAAATTCCCCCGACGCTGCTATTTTCACAAACTCTTCAAAGGTAACTCCTGTAGCTTCAAGTAACCAAACTTCGAGCCCGCAGAGCCAAAACGGTTCGTATGGAACCATGCTTAGATCTCCAATGGTCACCGAAGTGATGATGGTTGTTTTGGCCATTGTTCTCGTTGTTCTTCCTAAAGGAATTTTTAGCATTTATACATGA 588 0.4507 MKKKQQQSGAQFTCLFFFVLIVGGSIKIARGADDDLAKKCGEVVQKVLPCLDFATGKQQTPKKECCDAATNIRDTAPECLCYIIQQTHKGGQQFKSLGIQEDKLLQLPSACNVKNANTSDCPKLLGLSPNSPDAAIFTNSSKVTPVASSNQTSSPQSQNGSYGTMLRSPMVTEVMMVVLAIVLVVLPKGIFSIYT* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03706 195 SMART aai_6 40 121 IPR016140 -
Rops11g03706 195 CDD AAI_LTSS 47 113 - -
Rops11g03706 195 PRINTS Plant phospholipid transfer protein signature 60 74 IPR000528 GO:0006869|GO:0008289
Rops11g03706 195 PRINTS Plant phospholipid transfer protein signature 98 115 IPR000528 GO:0006869|GO:0008289
Rops11g03706 195 PRINTS Plant phospholipid transfer protein signature 39 55 IPR000528 GO:0006869|GO:0008289
Rops11g03706 195 Pfam Probable lipid transfer 34 121 IPR016140 -
Rops11g03706 195 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 26 170 IPR043325 -
Rops11g03706 195 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 38 121 IPR036312 -
Rops11g03706 195 Gene3D - 37 119 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03706 Rops-Chr11 70630451 70633477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03706 39 190 Acyl Lipid Metabolism Gene Families AT1G27950 44.872 4.85e-46 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03706 - - gmx:100499777 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03706 11 70630451 70633477 Rops2g01349 2 19239099 19241229 PCT