Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01344 ATGGAAGAAGGGGTTGTCATGCTGAGGCACCTCATCGCTCAGCTGAAACACCACCATCTCTTGGACCTGTCACACTCTCTTTCTTCTTCTTCCTCTTCTTCCTCTTCTTCATTCACCCTTCAATCTTCTCTTCCACAATATCACACTCACTTTCCACACCGCCCCAGATGGTTCTTCTTTGACACTGATGATAACTCCGTAGATGACTTGTGTGGCCTTGTAATGGCAGCTGGAGAGTCTGGAAGTTACAGTATGATGGAGCCTCTAAACCATCCACCTACTAAGAAGTCTCGAAGAGATAGGAGCAGGGGAAAATCATCTGGAAGGTCCTCTGTGACTGAAGTTATGGAGCAACAAATTTGGAAAGATTTTCCTGAAGATCTATTTGAGGCTGTGATTGCACGACTTCCCATTGCCACATTTTTCCGCTTCCGCTCTGTATGCCGGCGATGGAATTCTTTGCTGACCTCTCAAAGTTTTTCTCAGCATTGTGCTCAAGTCCCACAAACAAATCCATGGTTTTACACCATAACTCATGAACATGCAAATTCGGGAGCTATGTATGACCCTTCTATGAAAAAATGGCATCATCCCACTGCATCAACACTTCCCTCAAAGTTGATTGTTTTACCAGTGGCTTCTGCAGGGGGTCTTGTTTGCTTTCTTGGCATTGGTCATCAAAACTTCTATGTTGGTAATCCACTGACTCAATCCTTCAAGGAGTTGCCAACTCGGTCAGTTAAGGTTTGGTCTCGTGTTGCTGTAGGGATGACAATAAATGGGAACCCAACTGGTGCAGGCTACAAGATCCTATGGGTGGGTTGCAATGGAGAATATGAAGTTTATGACTCAGTAAGAGAGTCTTGGAGCCGTCCGGGAAACATGCCTGCAGGTATTAAGCTGCCATTATCGCTCAATTTTAGGTCACAAGCTGTTTCTATTGGCAGCACACTATACTTCATGCATTCAGATCCAGAAGGGATTGTTTCCTATGATATGGCAACTGGGGTTTGGACACAGTACATGATCCCAGCTCCATTGCATCTGACTGACCATACTTTGGCTGAGTGTGATGGCCGGGTCATGCTTGTGGGGTTGCTCACAAAGAATGCGGCCACATGTATATGCATATGGGAGCTGCAGAAGATGACGTTTTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTAGACTTTTATGGGAAGCACATTAGGATGACTTGCCTGGGAAACAAAGGCTTGCTCATGTTGTCCTTGAGATCAAGACAAATGAATCGATTGGTTACTTACAACATAGCAACTAGGGAATGGCTGAAGGTTCCTGGCATTGACCTGGGAATACTTCCCTTGAATCATGAGGTTCTTTGCAATTTGCTGGTTGTTGGTGCTGATGTAGTAATGATAATACTCATTGCTGGTTTAACAAAGCAGATGGAAAATGATATGGGTTTGTAG 1461 0.447 MEEGVVMLRHLIAQLKHHHLLDLSHSLSSSSSSSSSSFTLQSSLPQYHTHFPHRPRWFFFDTDDNSVDDLCGLVMAAGESGSYSMMEPLNHPPTKKSRRDRSRGKSSGRSSVTEVMEQQIWKDFPEDLFEAVIARLPIATFFRFRSVCRRWNSLLTSQSFSQHCAQVPQTNPWFYTITHEHANSGAMYDPSMKKWHHPTASTLPSKLIVLPVASAGGLVCFLGIGHQNFYVGNPLTQSFKELPTRSVKVWSRVAVGMTINGNPTGAGYKILWVGCNGEYEVYDSVRESWSRPGNMPAGIKLPLSLNFRSQAVSIGSTLYFMHSDPEGIVSYDMATGVWTQYMIPAPLHLTDHTLAECDGRVMLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNIWCLDFYGKHIRMTCLGNKGLLMLSLRSRQMNRLVTYNIATREWLKVPGIDLGILPLNHEVLCNLLVVGADVVMIILIAGLTKQMENDMGL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01344 486 Gene3D - 121 160 - -
Rops2g01344 486 PANTHER BNACNNG10540D PROTEIN 97 443 - -
Rops2g01344 486 FunFam F-box only protein 6 171 454 - -
Rops2g01344 486 Gene3D - 169 449 IPR015915 GO:0005515
Rops2g01344 486 SUPERFAMILY Galactose oxidase, central domain 185 446 IPR011043 -
Rops2g01344 486 FunFam F-box only protein 6 121 160 - -
Rops2g01344 486 SUPERFAMILY F-box domain 113 190 IPR036047 GO:0005515
Rops2g01344 486 ProSiteProfiles F-box domain profile. 118 163 IPR001810 GO:0005515
Rops2g01344 486 MobiDBLite consensus disorder prediction 84 112 - -
Rops2g01344 486 SMART fbox_2 124 164 IPR001810 GO:0005515
Rops2g01344 486 CDD F-box_AtFBW1-like 123 160 - -
Rops2g01344 486 Pfam F-box domain 121 160 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01344 Rops-Chr2 19155289 19158309 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01344 - - gmx:100810179 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01344 2 19155289 19158309 Rops2g01344 2 19155289 19158309 ECH
Rops11g03702 11 70584611 70589565 Rops2g01344 2 19155289 19158309 PCT