Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03702 ATGGAAGGTTTGGCCATGCTGAAGCAACTCATCGGTCAGCTTCAGCAACTCTTGGACTATAACAACTCTCATCATCATCTTTCTCCTTCTTCTTCTTCTTCTCCTTATTTCGTCTTTCAACCTTCTCATCGCACTCTCCTCATTCAACAACATCCAAGATGTACCTCCCTTGACATTGAAGATAGCTCTGTAGATGACTGCTGTGACCTTGTAATGGCAGCTGGAAAATCTGGTAGTTTCAGGATGTCAGAGCCTCTAAAGCCTCCACCTGCTAAGAGGTTTCGTAGAGATCGAAGCAGGGGCAAATTGTCTGGAAGATCCTGTGCAAGTGAAGTTATGGATCAAGAAATTTGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTGATTGCACGACTTCCTATTGCCACATTTTTCCGCTTCCGCTCTGTGTGTCGGCAATGGAATTCTTTGCTGACTTCTCAAAGTTTTTCTCAGCATTGTGCCCAAGTCCCACAAGAAAATCCATGGTTTTACACCATAAATCATGAAAATGTGAATTCAGGAGCCATGTATGACCCTTCTTTGAAAAAATGGCATCATCCCTCTATATCAACACTGCCCACAAAGTTGATTGTTTTACCAGTGGCTTCTGCAGGGGGTTTAGTTTGTTTTCTTGACATTGGTCATCGAAACTTCTATGTATGTAACCCCCTGACTCAATCCTTCAAGGAGTTGCCAGCTCGATCAGTTAAGGTCTGGTCTCGTGTCGCTGTAGGGATGACTATAAATGGAAATTCAGCTGGTTCAGGCTACAAGATTCTATGGGTGGGCTGTGATGGAGAGTATGAAGTTTATGACTCAGGGACAAACTCTTGGAGTCATCCAGGAAACATGCACGGAGGTATGAAGCTTCCATTGTCGCTCAACTTTAGGTCACAAGCTGTCTCAATTGGCAGCACACTTTACTTCATGCGTTCAGATCCAGAAGGGATTGTTTCCTATGATATGGCAACTGGGGTTTGGAAACAGTACATAATCCCAGTGCCACTGCATCTGACTGACCACACTCTGGCTGAGTGTGATGGCCAGATCATGCTTGTGGGTTTGCTGACGAAGAATGCAGCCACATGTGTATGCATATGGGAGCTGCAGAAAATGACACTCTTGTGGAAGGAGGTAGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCTTGAGATCTAAACAAATGAATCGGTTGGTTACTTACAACATAGCAAGGAAGGAATGGCTGAGGGTTCCCGGCAATGGCCTGTCATTTTTCCCCTCCAGTCTTGTGGTTCTTTGCAATTTGCAGGCCTTTGGTGTGATATGCCTCATCCTCGAACACCTTGGTAGAAAGAGATTTCGAACACGCAACTTGTTTCTGTGGTCAAATGATGATGAACCAAGGCGTTGTGATGTAAGGATAAGCAGACTTGCTTCAAGGTTCAACCCCCGTTCAGCCTCTGACAAACATAAAGGCTTGGGTTTATGA 1554 0.4466 MEGLAMLKQLIGQLQQLLDYNNSHHHLSPSSSSSPYFVFQPSHRTLLIQQHPRCTSLDIEDSSVDDCCDLVMAAGKSGSFRMSEPLKPPPAKRFRRDRSRGKLSGRSCASEVMDQEIWKDFPEDLFEAVIARLPIATFFRFRSVCRQWNSLLTSQSFSQHCAQVPQENPWFYTINHENVNSGAMYDPSLKKWHHPSISTLPTKLIVLPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTINGNSAGSGYKILWVGCDGEYEVYDSGTNSWSHPGNMHGGMKLPLSLNFRSQAVSIGSTLYFMRSDPEGIVSYDMATGVWKQYIIPVPLHLTDHTLAECDGQIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIARKEWLRVPGNGLSFFPSSLVVLCNLQAFGVICLILEHLGRKRFRTRNLFLWSNDDEPRRCDVRISRLASRFNPRSASDKHKGLGL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03702 517 SMART fbox_2 121 161 IPR001810 GO:0005515
Rops11g03702 517 CDD F-box_AtFBW1-like 120 157 - -
Rops11g03702 517 Pfam F-box domain 118 157 IPR001810 GO:0005515
Rops11g03702 517 PANTHER BNACNNG10540D PROTEIN 99 440 - -
Rops11g03702 517 Gene3D - 171 446 IPR015915 GO:0005515
Rops11g03702 517 FunFam F-box only protein 6 118 157 - -
Rops11g03702 517 SUPERFAMILY Galactose oxidase, central domain 182 454 IPR011043 -
Rops11g03702 517 Gene3D - 118 157 - -
Rops11g03702 517 FunFam F-box only protein 6 168 491 - -
Rops11g03702 517 ProSiteProfiles F-box domain profile. 115 160 IPR001810 GO:0005515
Rops11g03702 517 SUPERFAMILY F-box domain 112 192 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03702 Rops-Chr11 70584611 70589565 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03702 - - gmx:100810179 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03702 11 70584611 70589565 Rops2g01344 2 19155289 19158309 PCT