Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00997 ATGGTTCATATGGCATGCAGCAGCAGCACTATTAGCCAGTACCTGCTGCATTTTGCAGTACCCATCATCATCTCATGCCTCGGTTTCATCGTCACATTGAACTACTTCATTTCACTTGCTGCGTGGATCTTCAACAAGAGTTTCAGATCCGAGAAAAACCTTATCAGAAGCTACGGTTCATGGGCTCTGGTCACCGGAGCCACCGACGGCATCGGAAAAGCCATGGCCTATCAGTTAGCACAGAGAGGGCTCAACCTTGTTCTTGTCAGCAGAAGCTCCAAGAAGCTTGAAACAGTTGCTAGTGAAATCAAAGCAAAACACCCTCATACCTCCATAAAGATAATCCAGATGGACTTTTCCGGCGACTTGTCGGCGGGTCTGCTGCAAATAGCGGAGGTGACCCATGATTTGGATCTTGGCATTTTGATCAACAACGTTGGGATCACATACCCTAGTGCCATGTTCTTTCATGAGGTGGAGGAGAAGGTGTGGATGAACATTATTAGAGTCAACATCGAAGGTACGACGAGGGTAACAAAAGCTGTTTTGGGTGGGATGTTACAGAGGAAAAGGGGTGCGATCATTAATATTGGCTCTGGTGCTGCGGTGGTTGTGCCTTCTCATCCTCTCTTTACTATCTATGCAGCTACAAAAACTTACGTGGATCAGTTATCAAGATCTCTGCACGTGGAATATAGATCATATGGGATCCATGTGCAATGTCAGGTACCATTGTACGTTGCGACGAATATGGTATCAAGGGTTGCATCGATCAAGAGAGAATCTATGTTCATACCAAAAGCTGAGGGTTATGCAAGAGCCGCAGTTCGTGAAATTGGGAATGAACCAAGGTGCTCACCTTATTGGGCTCACTCTATTCAGTGGTGCCTCGCACGCTTAATCCCTGACCCACTTCTCGATGCTTGGCGCTTCTCCATTGGTCTGCGCCGCAGGAATCATAAGGAACAAAGGAACAGTACGAAGAAGAAACACTAG 996 0.4679 MVHMACSSSTISQYLLHFAVPIIISCLGFIVTLNYFISLAAWIFNKSFRSEKNLIRSYGSWALVTGATDGIGKAMAYQLAQRGLNLVLVSRSSKKLETVASEIKAKHPHTSIKIIQMDFSGDLSAGLLQIAEVTHDLDLGILINNVGITYPSAMFFHEVEEKVWMNIIRVNIEGTTRVTKAVLGGMLQRKRGAIINIGSGAAVVVPSHPLFTIYAATKTYVDQLSRSLHVEYRSYGIHVQCQVPLYVATNMVSRVASIKRESMFIPKAEGYARAAVREIGNEPRCSPYWAHSIQWCLARLIPDPLLDAWRFSIGLRRRNHKEQRNSTKKKH* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00997 331 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 201 229 IPR020904 GO:0016491
Rops2g00997 331 Gene3D - 53 287 - -
Rops2g00997 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 148 IPR002347 -
Rops2g00997 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 214 233 IPR002347 -
Rops2g00997 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 192 200 IPR002347 -
Rops2g00997 331 PANTHER RH59310P 23 329 - -
Rops2g00997 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 57 311 IPR036291 -
Rops2g00997 331 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 55 286 - -
Rops2g00997 331 CDD 17beta-HSD1_like_SDR_c 59 302 - -
Rops2g00997 331 Pfam short chain dehydrogenase 61 255 IPR002347 -
Rops2g00997 331 PIRSF 11-beta-HSD1 11 324 - -
Rops2g00997 331 PRINTS Glucose/ribitol dehydrogenase family signature 137 148 IPR002347 -
Rops2g00997 331 PRINTS Glucose/ribitol dehydrogenase family signature 235 252 IPR002347 -
Rops2g00997 331 PRINTS Glucose/ribitol dehydrogenase family signature 214 233 IPR002347 -
Rops2g00997 331 PRINTS Glucose/ribitol dehydrogenase family signature 186 202 IPR002347 -
Rops2g00997 331 PRINTS Glucose/ribitol dehydrogenase family signature 61 78 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00997 Rops-Chr2 14030372 14037582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00997 5 319 Lipid Metabolism Gene Families AT1G24470 57.595 3.85e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00997 K10251 - qsu:112015935 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00997 2 14030372 14037582 Rops2g00997 2 14030372 14037582 ECH
Rops2g00997 2 14030372 14037582 Rops11g03769 11 71399442 71401897 PCT