Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03769 ATGGAATGCTGTATAATCAACAAGCTCAAGGCTCAACCTTTATGGTTCCTCGTGCTCTTTGCTCTTGGTTCCATAACGATTCTGAGGTTCACTTTGGTTTTTCTCAGATGGGTCTATGTCAATTTTCTCAGGGCACCCAAAAATCTCAAAAAGTACGGATCTTGGGCACTCGTTACTGGCCCCACTGATGGCATTGGAAAAAGCTTCGCCTTTGAGCTCTCTCGTAAGGGTTTGAATCTTGTCTTGGTGGGTAGGAACCCCGACAAGTTGAAGGACGTGTCAGATTCGATTCGAGCCAAGTTCGGAAAAACCGAGGTGAAAACTGTTGTTGTCGATTTTTCGGGTAATCTCGATGAGGGTGTTGCAAAGATTCGTGAAACGATTGAAGGGTTGGATGTTGGGGTGTTGATTAACAACGTGGGAATCTCGTACCCTTTTGCGAGGTTCTTCCATGAAGTGAATGAGGAGCTATTGAACAATCTGATTAAGGTGAATATCGTGGGAACTACTAAGGTTACACAAGCTGTTTTGCCGGGGATGCTTAAGAGAAAGAAGGGTGCGATTGTTAACATTGGCTCTGGAGCTGCTATTGTGATTCCTTCAGATCCACTTTATGCTGTTTATGCTGCCACAAAAGCGTACATCGATCAATTTTCCAGATGTCTCTATGTTGAATACAAGAAAAGTGGGATTGACGTGCAGTGTCAGGTTCCATTATATGTGGCAACAAAGATGGCATCAATTAGGAAATCTTCATTCTTTGTTCCATCAACAGATGGATATGCCAAAGCAGGTGTGAGATGGATAGGCTATGACCCTCGTTGCACACCATACTGGCCTCACACCCTTCTTTGGGCCTTGGCATGCTCATTGCCTGAGTCTATTGTTGATGCTTGGCGCCTCAGGTTTTGTCTTGGTATTAGAAAGAGGGGACAGCTCAAGGAGTCAAGGAAGCAGGAATAA 963 0.4465 MECCIINKLKAQPLWFLVLFALGSITILRFTLVFLRWVYVNFLRAPKNLKKYGSWALVTGPTDGIGKSFAFELSRKGLNLVLVGRNPDKLKDVSDSIRAKFGKTEVKTVVVDFSGNLDEGVAKIRETIEGLDVGVLINNVGISYPFARFFHEVNEELLNNLIKVNIVGTTKVTQAVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRKSSFFVPSTDGYAKAGVRWIGYDPRCTPYWPHTLLWALACSLPESIVDAWRLRFCLGIRKRGQLKESRKQE* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03769 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 310 IPR036291 -
Rops11g03769 320 Gene3D - 49 266 - -
Rops11g03769 320 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Rops11g03769 320 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Rops11g03769 320 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Rops11g03769 320 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Rops11g03769 320 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Rops11g03769 320 PIRSF 11-beta-HSD1 5 314 - -
Rops11g03769 320 Pfam short chain dehydrogenase 55 247 IPR002347 -
Rops11g03769 320 FunFam very-long-chain 3-oxoacyl-CoA reductase 1 49 277 - -
Rops11g03769 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Rops11g03769 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Rops11g03769 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Rops11g03769 320 PANTHER RH59310P 14 318 - -
Rops11g03769 320 CDD 17beta-HSD1_like_SDR_c 53 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03769 Rops-Chr11 71399442 71401897 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03769 1 320 Lipid Metabolism Gene Families AT1G67730 65.000 2.47e-167 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03769 K10251 - gmx:100814139 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00997 2 14030372 14037582 Rops11g03769 11 71399442 71401897 PCT