Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00984 ATGGATTGGAAGAGAACCAAAGAAGAGGAAGTCGTGACCGGTAGAGTGAAATGGAGTGTTTACTCAACCTTTGTCACATCAGCTTATAGAGGAGCACTTGTTCTAGTTATTCTTCTCTGTCAAATTCTCTTTCAAGTTATGCAGATGGGAAACAATTATTGGATTTCTTGGGCTACAGAACAAAAGGGCAGGGTCAACAATGGGAAGCTTATGGGAACATTTGTTCTTCTATCTAGTGGCAGCTCTATCTTCATACTGGGAATGAATGTTTTAATGGCAACAGTTGTTGTAGAGACTACTCAGCGCCTTTTTCATGGAATGATCACATCAATTTTCAGGGCACTTGTTTCATTTTTTGACAACACACCTTCAAGCCGAATTTTGAGTAGGTCCTTTACAGATCAAAGTACAGTAGACACAGATATACCTTACAGATTACCTGGACTAGTATTTATTTGCACTTATCTAGTTGTTGAGTATCATCATACTAATGTCCCAAGTTGCTTGTTCTCTCTCAATTCATTTGCAATTCTGATAGAAACAATGCATCTAGAGCTGGATACTTGGACAGCTTTGGTTGTCATTTTGTGTTTCCTTGGGTTGATTCTAAAGGAGACAATCATGGGAGGTAAGAGTTCAAAAGGGTCTGAAAGGAGACATGTTTCATCATATGGGTCTGCTGGTTCTTCATCTTCATGGGATAACCATGGATACCCACAGTCACCATATCCATACCAACAACAAAATCCATATCAAGCACCTCTTCACCACCGTGCACCGGCTTCATTGCACGACTATGCACAGCCAAGAAGGAGGTTAGATAGGAGGTATTCCAGGATAGCTGATGATTACCATTCACTGGATGAGGTTACTGCTGCTCTTTCACACGCTGGCCTGGAATCTTCTAATCTAATTGTTGGCATTGATTTCACCAAGAGCAATGAGTGGACAGGGAAGAAGTCATTCAATAGAAAAAGTTTACATCATATTGGAAGTGCTCACAATCCTTATGAACAAGCAATCACGATTATTGGGAAAACTTTAACCGCTTTTGATGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTCAGTTTCCATTCAGATGAGGAGTGCTGCAATGGATTTGAGGAAGTTTTGTCAAAATATAGAGAGATTGTTCCTCGCCTCCGACTAGCAGGACCCACCTCATTTGCCCCTATTATTGAGATGGCCATGACTATTGTTGAGCAAAGTGGTGGTCAATATCATGTCTTGCTCATAATTGCTGATGGACAGGTAACCAGAAGCGTTGACACAAAGCATGGTCAGCTAAGTCCACAGGAACAAAGGACAATTGATGCAATTGTAAAGGCCAGCGAGTATCCACTGTCAATCGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAGTTTGATGATAACATTCCAGCTCGAGCCTTTGACAATTTTCAGTTTGTGAATTTTACCGAAATAACGTCCAGCAGTGTAGATTCAAGCAGAAAAGAGACAGAGTTTGCTCTAGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCATGGCATATTGGGTGCACGGAGGGGACATTCACCAGACAGAGTTCCTCTACCTCCACCTCATTATGATAGAGCTTCTTCAAGCAGCAGCAGAACATCTTTTCGTTCAAACAGTTTTCAGCAGAGTACACATACATATGCTGGCTACGACAATGAAGTTAACACAGCGACAGAACCATCTTCAAGTGGCTTATATGACAATAAGATTTGCCCCATTTGTCTTACTAATGGGAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGTGACTGTGGAGAAGGCCTGGAATTCTGCCCTATTTGCCGGAGCACAATCAATACCAGAATAAAGCTTTACTAG 1947 0.416 MDWKRTKEEEVVTGRVKWSVYSTFVTSAYRGALVLVILLCQILFQVMQMGNNYWISWATEQKGRVNNGKLMGTFVLLSSGSSIFILGMNVLMATVVVETTQRLFHGMITSIFRALVSFFDNTPSSRILSRSFTDQSTVDTDIPYRLPGLVFICTYLVVEYHHTNVPSCLFSLNSFAILIETMHLELDTWTALVVILCFLGLILKETIMGGKSSKGSERRHVSSYGSAGSSSSWDNHGYPQSPYPYQQQNPYQAPLHHRAPASLHDYAQPRRRLDRRYSRIADDYHSLDEVTAALSHAGLESSNLIVGIDFTKSNEWTGKKSFNRKSLHHIGSAHNPYEQAITIIGKTLTAFDEDNLIPCFGFGDASTHDQDVFSFHSDEECCNGFEEVLSKYREIVPRLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTKHGQLSPQEQRTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEITSSSVDSSRKETEFALAALMEIPSQYKATIDHGILGARRGHSPDRVPLPPPHYDRASSSSSRTSFRSNSFQQSTHTYAGYDNEVNTATEPSSSGLYDNKICPICLTNGKDMAFGCGHQTCCDCGEGLEFCPICRSTINTRIKLY* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00984 648 Gene3D ABC transporter type 1, transmembrane domain 2 231 IPR036640 GO:0005524|GO:0016020
Rops2g00984 648 MobiDBLite consensus disorder prediction 211 233 - -
Rops2g00984 648 Pfam Copine 326 539 IPR010734 -
Rops2g00984 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 582 648 IPR013083 -
Rops2g00984 648 MobiDBLite consensus disorder prediction 558 573 - -
Rops2g00984 648 SUPERFAMILY vWA-like 303 485 IPR036465 -
Rops2g00984 648 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 35 158 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g00984 648 SUPERFAMILY ABC transporter transmembrane region 33 158 IPR036640 GO:0005524|GO:0016020
Rops2g00984 648 Pfam Zinc finger, C3HC4 type (RING finger) 602 642 - -
Rops2g00984 648 SUPERFAMILY RING/U-box 599 644 - -
Rops2g00984 648 PANTHER COPINE FAMILY PROTEIN 1 215 625 - -
Rops2g00984 648 MobiDBLite consensus disorder prediction 542 573 - -
Rops2g00984 648 SMART VWA_4 301 504 IPR002035 -
Rops2g00984 648 MobiDBLite consensus disorder prediction 219 233 - -
Rops2g00984 648 Pfam ABC transporter transmembrane region 34 150 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g00984 648 ProSiteProfiles Zinc finger RING-type profile. 605 638 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00984 Rops-Chr2 13796174 13806613 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00984 K16280 - gmx:100800161 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00984 2 13796174 13806613 Rops2g00984 2 13796174 13806613 ECH
Rops2g00984 2 13796174 13806613 Rops11g03789 11 71543140 71547622 PCT