Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00976 ATGGCGGAGATTTCATCAGTGGAGATCGTGACAAAGCAAAAATGTGCAACACTCCGAAGAAGGACACAACTGTATTCAAGTGTACGACCAGCCATCATGAAGTGTTTCACTTTGTTCTTAGTCTCTTTCTGGGTTCTCCTCGGTCTCTGTTTTCAGAGTGTGTCATCTCAAAACATATCTGAGAGCAACCTACAGCAAGCTAGCTTCCCACCAAGAGGTTGGAATTCGTATGATGCCTTTTCATGGACAATTTCTGAAGAAGAATTCTTGGAGAGTGCTGAAATAGTTTCTCAGCGTCTCCATGCTCATGGATATGAGTTTGTTGTGGTGGATTACCTCTGGTATAGGAAGAAAGTCAAGGGTGCTTACGCTGATTCTCTTGGATTTGATGTGATTGATAAATGGGGAAGGGTGATCCCTGACCCAGGAAGGTGGCCTTCTTCCAGAGGTGGGAAGGGGTTCAGTGAAGTAGCTAATAAAGTACATAGCTTGGGTTTAAAGTTTGGGATTCATGTTATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACCCCTATCCTAGATACAACAAAGGGAGGTGCTTATCAAGAATCTGGTCGAGTATGGCATGCAAAAGACATAGCAATCCCAGAGCGGGCTTGTGCATGGATGCCTCACGGTTTCATGAGTGTAAATACGAAGTTGGGAGCAGGGAAAGCTTTTTTGAGATCCCTTTATGAGCAGTATGCTGCTTGGGGTGTTGATTTTGTGAAACATGACTGTGTGTTTGGTGATGACTTGGATTTAAATGAAATTACCTATGTATCGAAGGTTCTCAGCCAGCTTAATCATCCCATTGTATATTCTCTGTCTCCTGGAACCAGTGTGACACCAGCCATGGCCAAGGATGTCATTGGACTAGTTAACATGTACCGTATAACAGGAGATGACTGGGATACATGGGGGGATGTCAAGGCTCATTTTGATGTATCAAGGGATTTTTCTACAGCTAATATGATAGGAGCAAAGGGTTTAAAGGGGAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAGGTTCAAATGAAGGTCCTCACAGGTATAGTAAACTCAATCTAGAAGAGAAAAGGACACAGATTACTTTGTGGGCTTTGGCAAAGTCTCCACTTATGTATGGGGGGGATGTGCGGAAGATTGATCCTGCCACATATGAACTTATCACAAATCCTACCCTGCTGGAGATTAATTATTTCAGCTCAAATAATATGGAGTTTCCTTATGTCACAAGCTCAAAGACCTTGAAGCTTGAAAGATCTAAGAAAGGAATGAAACCATCATATACACATTCACTAGGCCTCACTGGCTGCACTGAACCAAAGGCAAGTGGTTGGTCCACTGAAAGTCTTAACCAAGATCTTGAAAGAATCTGTTGGAAAAGGAGTTTAAAAAACAAGCATCAGGCCCCTTTCTGTGTACACAAGAGAGAACTTCGGTTCAGATTAGATGGAGAGGGCTTGTATCAAGAAAACTACCGAGGGAAACATCAATTAGTTGCAACCGACAGAATGAAATTTTGCTTGGATGCTTCTCCAAAAAGAAAGGTCACTTCTGAAGAGTTCAAGAGAGGTACATTTTCTCCTTGCAGATGGGATTCAAATCAGATCTGGGAGCTGAACTCCAACGGGACCTTGGTAAATAGTTACTCCGGTCTTTGTGCAACAGTAGAGTATGTTGAAGCTGATGTTAATTCTGGTGGGATTCGCTCTTGGATTGCAACGGGAAGAAAAGGAGAAATCTATATGGCTTTCTTCAATCTAAGTGAACAAAAGACGGTGATATATGCAAAGACAGCATATCTGGCTAAGGTTTTCCCTGACAGACGTATCAATTCTTGTCAGGGTAAGGAAGTGTGGAGTGGAAAGAACGTTATCACAACGCAGGGGACGTTATCAATGGTCGTGGAAATTCATGGATGTGCACTGTTTATTCTAAATTGTGACTAG 2001 0.4273 MAEISSVEIVTKQKCATLRRRTQLYSSVRPAIMKCFTLFLVSFWVLLGLCFQSVSSQNISESNLQQASFPPRGWNSYDAFSWTISEEEFLESAEIVSQRLHAHGYEFVVVDYLWYRKKVKGAYADSLGFDVIDKWGRVIPDPGRWPSSRGGKGFSEVANKVHSLGLKFGIHVMRGISTQAVNANTPILDTTKGGAYQESGRVWHAKDIAIPERACAWMPHGFMSVNTKLGAGKAFLRSLYEQYAAWGVDFVKHDCVFGDDLDLNEITYVSKVLSQLNHPIVYSLSPGTSVTPAMAKDVIGLVNMYRITGDDWDTWGDVKAHFDVSRDFSTANMIGAKGLKGNSWPDLDMLPFGWLTDPGSNEGPHRYSKLNLEEKRTQITLWALAKSPLMYGGDVRKIDPATYELITNPTLLEINYFSSNNMEFPYVTSSKTLKLERSKKGMKPSYTHSLGLTGCTEPKASGWSTESLNQDLERICWKRSLKNKHQAPFCVHKRELRFRLDGEGLYQENYRGKHQLVATDRMKFCLDASPKRKVTSEEFKRGTFSPCRWDSNQIWELNSNGTLVNSYSGLCATVEYVEADVNSGGIRSWIATGRKGEIYMAFFNLSEQKTVIYAKTAYLAKVFPDRRINSCQGKEVWSGKNVITTQGTLSMVVEIHGCALFILNCD* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00976 666 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 43 665 IPR002241 GO:0004553|GO:0005975
Rops2g00976 666 SUPERFAMILY (Trans)glycosidases 67 416 IPR017853 -
Rops2g00976 666 CDD GH27 70 415 IPR002241 GO:0004553|GO:0005975
Rops2g00976 666 Gene3D Aldolase class I 48 416 IPR013785 -
Rops2g00976 666 Gene3D - 580 665 IPR013780 -
Rops2g00976 666 Pfam Alpha galactosidase A 241 415 IPR002241 GO:0004553|GO:0005975
Rops2g00976 666 PRINTS Glycosyl hydrolase family 27 signature 64 83 IPR002241 GO:0004553|GO:0005975
Rops2g00976 666 PRINTS Glycosyl hydrolase family 27 signature 158 179 IPR002241 GO:0004553|GO:0005975
Rops2g00976 666 PRINTS Glycosyl hydrolase family 27 signature 373 394 IPR002241 GO:0004553|GO:0005975
Rops2g00976 666 Pfam Alpha galactosidase C-terminal beta sandwich domain 584 663 IPR041233 -
Rops2g00976 666 SUPERFAMILY Ricin B-like lectins 515 592 IPR035992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00976 Rops-Chr2 13704177 13710147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00976 43 495 Glycoside Hydrolase AT3G26380 65.939 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00976 - - gmx:100783705 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00976 2 13704177 13710147 Rops2g00976 2 13704177 13710147 ECH
Rops2g00976 2 13704177 13710147 Rops11g03794 11 71582789 71587956 PCT