Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03794 ATGATGAAGTGTTTCTCCATATCCTTCATCTCTCTCTACATTCTCCTCTGTCTCTGTTTTCAAAGTGTGTCATCTAGAAATGTATCTAAGAGTGACCTGCAGCTAGCTAGCATCCCACCAAGAGGTTGGAATTCCTATGATTCCTTTTGCTGGACAATTTCTGAAGAAGAATTCTTACAGAGTGCTGAAATAGTTTCTCAGCGTCTCCATGATCATGGATATGAGTATGCTGTGGTGGACTATCTCTGGTATAGAAGGAAGGTCCCCGGTGCTCATCATGATTCTTTTGGATTTGATGTGATTGATGAATGGGGGAGGATGATTCCTGACCCAGGAAGGTGGCCTTCTTCCAAAGATGGGAAAGGGTTCACTGAAATAGCTAATCGAGTACATAGCATGGGTTTAAAGTTCGGGATTCATGTTATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACCCCTATCCTAGACACAAAAACGGGAGGTGCTTATCAAGAATCTGGTCGAGTGTGGCATGCAAAAGACATAGCAATCCCAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTAAACACAAATTTGGGAGCTGGGAAAGCTTTTCTGAGGTCCCTTTATCAGCAGTATGCTGCATGGGGTCTTGATTTTGTGAAACATGACTGTGTATTTGGAGATGACTTGGATTTAAATGAAATAAGCTATGTATCGGAGGTTCTCAGGGAGCTTGATCGCCCCATTGTATATTCTTTATCTCCTGGAACCAGTGTGACACCAGCCATGGCCAAGGATGTCAGTGGACTGGTCAATATGTATCGTATAACAGGGGATGACTGGGACACATGGGGGGATGTCAAAGCACATTTTGATGTAACAAGGGATTGTTCAACTGCTAATATGATAGGAGCAAAAAGTTCAATGGGGAACTCCTGGCCTGATTTGGACATGCTGCCATTTGGATGGCTAACTGATGCTGGTTCAAATGAAGGTCCACATAGGTATAGTAACCTCAATCTAGAAGAGAAGAGGACACAGATGACCTTGTGGTCCATGGCAAAGTCTCCTCTTATGTATGGGGGGGATGTACGGAAGATTGATCCTACCACATATGATCTTATTACAAATCCTACCCTTCTGGAGATTAATTCTTTTAGCTCAAATAATATGGAGTTTGCTTACATTACAAGCCTGAAGAGTGACGATCAGGATTCTGGAAGGCAAATGAGAAGAAGCAACAAAGAAACGAAAACATCATATACACATACATTAGGCCTCACTAGCTGCACTGAATCAAAGGCAAGTGGTTGGATTAGTGAAAATCTTAACGAATATTTTGAAAGAATCTGTTGGAAAAGGAGTTTAGGAAACAAGCATCTTGCCCCCTTCTGTGTGCACAAGCGAGAACTTCGCTCCATATTAGATGAAGAGAGTATGCATCAACAGGATCATCAAGGGAAACATCATTTAGTGGCAGCCAACAGAATAAGTTTTTGCTTGGATGCTTCTCCAAAACGGAAGCTTACTTCTAAAGAGTTCAAGAGAGGTACATTTTCTCCCTGCACGTGGGATTCAAATCAGATGTGGGAGCTGAATCCTAATGGGACCCTGGTAAATAGTTATTCTGGCTTATGTGCAACCATAGAGTCAGTCAAAGCTCCTATTAATTCTGGTGGTGTTCGCGCTTGGATTGCAACAGGAAGAAAAGGAGAAGTTTATGTTGCTTTCTTCAATCTAAGTGAACAGAAGACGGTGATATCTGCTAAGACATTAGACCTGGCTAAGGTTCTACCTGGCAGAGACTTCAGTTCTTGCAAGGGCAGTGAAGTGTGGAGTGGAAGTGACATAGTAATAACGGATGGGACATTATCAATGCCAGTGGAAGTGCATGGAATTGCACTGTTTGTTCTGAATTGCAACTAG 1926 0.4268 MMKCFSISFISLYILLCLCFQSVSSRNVSKSDLQLASIPPRGWNSYDSFCWTISEEEFLQSAEIVSQRLHDHGYEYAVVDYLWYRRKVPGAHHDSFGFDVIDEWGRMIPDPGRWPSSKDGKGFTEIANRVHSMGLKFGIHVMRGISTQAVNANTPILDTKTGGAYQESGRVWHAKDIAIPERACAWMPHGFMSVNTNLGAGKAFLRSLYQQYAAWGLDFVKHDCVFGDDLDLNEISYVSEVLRELDRPIVYSLSPGTSVTPAMAKDVSGLVNMYRITGDDWDTWGDVKAHFDVTRDCSTANMIGAKSSMGNSWPDLDMLPFGWLTDAGSNEGPHRYSNLNLEEKRTQMTLWSMAKSPLMYGGDVRKIDPTTYDLITNPTLLEINSFSSNNMEFAYITSLKSDDQDSGRQMRRSNKETKTSYTHTLGLTSCTESKASGWISENLNEYFERICWKRSLGNKHLAPFCVHKRELRSILDEESMHQQDHQGKHHLVAANRISFCLDASPKRKLTSKEFKRGTFSPCTWDSNQMWELNPNGTLVNSYSGLCATIESVKAPINSGGVRAWIATGRKGEVYVAFFNLSEQKTVISAKTLDLAKVLPGRDFSSCKGSEVWSGSDIVITDGTLSMPVEVHGIALFVLNCN* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03794 641 Gene3D - 553 640 IPR013780 -
Rops11g03794 641 SUPERFAMILY (Trans)glycosidases 34 384 IPR017853 -
Rops11g03794 641 PRINTS Glycosyl hydrolase family 27 signature 127 148 IPR002241 GO:0004553|GO:0005975
Rops11g03794 641 PRINTS Glycosyl hydrolase family 27 signature 33 52 IPR002241 GO:0004553|GO:0005975
Rops11g03794 641 PRINTS Glycosyl hydrolase family 27 signature 342 363 IPR002241 GO:0004553|GO:0005975
Rops11g03794 641 Gene3D Aldolase class I 17 386 IPR013785 -
Rops11g03794 641 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 12 640 IPR002241 GO:0004553|GO:0005975
Rops11g03794 641 SUPERFAMILY Ricin B-like lectins 498 568 IPR035992 -
Rops11g03794 641 SUPERFAMILY Glycosyl hydrolase domain 556 639 - -
Rops11g03794 641 CDD RICIN 499 568 IPR000772 -
Rops11g03794 641 CDD GH27 39 384 IPR002241 GO:0004553|GO:0005975
Rops11g03794 641 Pfam Alpha galactosidase C-terminal beta sandwich domain 559 638 IPR041233 -
Rops11g03794 641 Pfam Alpha galactosidase A 209 384 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03794 Rops-Chr11 71582789 71587956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03794 12 470 Glycoside Hydrolase AT3G26380 66.739 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03794 - - gmx:100777954 1159.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00976 2 13704177 13710147 Rops11g03794 11 71582789 71587956 PCT