Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00958 ATGGGAGGTGGCGGGAGGGGAGGGAGGTCACGCACTCAAAGAAAGCATTTCCGTCAAAGCAGAGAGAATGTATGGAAGCGTTCTAAATCAGATCCAGATCCTTCTTCAAACTCTGAAAACCAAAATCAAAATCAAAATCAAAATACTACGTGGACTCCATTCGCCACTCAGAACACTGCTTTCGATGCCTATTACAAGGAGCAAGGGATAGTTCCCTCTCAAGAGTGGGATGAATTCGTTGCTCTTCTCAGAACTCCATTGCCCGCTTCCTTCAGAATCAATTCGAGTAGCCAGTTTTCTGACGACATTCGTTCTCAACTGGAGAATGATTTCGTGCATTCTCTTCGTTCCGAGGTTGTTGAAGGGGGAGAGACAGAGGCTATTAGGCCATTGCCGTGGTATCCTGGGAACTTTGCTTGGCATTCAAATTTTTCTCGGATGCAGTTGAGGAAGAATCAAACACTTGAGAGGTTCCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTCTTCTTGGATGTGCATTCAGATCATTTTGTACTTGATATGTGTGCTGCTCCAGGTTCCAAAACATTCCAGTTGCTTGAGATTATACACCAATCAACTACAGCAGGATCACTACCTGATGGAATGGTTATAGCAAATGATCTTGATGTCCAAAGATGTAATCTTCTCATCCACCAAACAAAAAGAATGTGCACGGCCAACCTAATTGTTACCAATCATGAAGCGCAGCACTTCCCAGGATGCCGTTTAAACAGGAATCATGAAAGGATGGAGTTTGATCTCAATATTGGCCAACTGTTATTTGATCGTGTTCTGTGTGATGTCCCGTGTAGTGGAGATGGTACTCTTCGCAAGGCACCTGATCTCTGGAGGAAATGGAACACAGGGATGGGACATGGGCTTCACAGCCTACAAGTTTTAATTGCTATGCGAGGTTTATCTTTACTTAAAATTGGTGGAAGAATGGTTTATTCAACTTGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGCAGAGGTTTTGCGGAGGTGTGGAGGGTCTGTTAAACTTGTTGATGTCTCTAGTGAGCTTCCACAACTTATTCGTCGGCCAGGTCTGAAGAGATGGAAGGTATATGACAAGGGCACTTGGTTAGCCTCTTACAAAGATGTTCCTAAGTTTCGTAGAAGTATAATTCTTCACAGTATGTTTCCTTCTGGCAGAGGCTGTCATCAGGATCTTGTTGACAGTAATTGTAATGTTGACATGGGATATGACATTACTAATGGTGTTAATGGAAATGCTGAAGACGATATTCAAGAAGCAGAGAATCCTGTGATGCCTGAGTGTGCTGAGGAAGTTTCTGATTTCCCTCTAGAGCATTGCATGAGGATAGTGCCTCATGATCAGAACACTGGAGCCTTCTTCATTGCTGTCCTGCAAAAAGTTTCTCCTCTGCCAGCTATTCCCGAAAAACAAAAAATAGAAATTGATGAGAAATATGTAGAACCGGCAAACCAGAGTCTTGAGAATGCACAAGTACTGCAGATTAATTCATCAGAAAGTTCTCATGAAGAAGTCTTAAAAGCAGTTTCAGAGGAAAATGTAAATGACAATGAACCCAAAACAGAAGATTTGGAAGTTGGTCCTGTTACATGTGAAGAACAGAATTCCGAGGAAACCGAGGAGCCCCATAATGTACAAAACATAGCAAAGAAGATTCCAGGTAAAAGAAAGCTACAAATTCAAGGCAAATGGAGAGGTGTTGACCCTGTTGTCTTTTTCAAAGATGAAGCAATTATTAATAGTATAAGGGATTTTTATGGAATCAATGAGCATTTTCCGTTCGATGGTCACCTTGTTACAAGAAACAATGATACAAGTCATGTGAAAAGAATTTATTATGTTTCCAAGTCAGTCAAGGATGTTCTTGAGTTGAACTTCTCAGTTGGGCAGCAACTTAAAATAACCTCAATTGGCCTGAAGATGTTTGAAAGACAAACAGCACGACAAGGTACCTCTGCACCATGTACTTTCCGGATATCGTCTGAAGGATTGCCCCTTATTCTCCCATACATAACCAAACAAATTCTACGGGCATCTCCCGTAGTCTTCAAGCATCTTTTGCAGAACAAAGATGTAAAATTTGAAGATTTTGATGATGCCGAGTTTGGTGAAAAGGCAGCAAACCTACTGCCAGGCTGTTGTGTGGTGATTATGGATAAAGGAAACACAGTTGCTTCAGAGCCCCTCAAAGAGGATGAGTCAACAATAGCCATTGGATGCTGGAAGGGTCGGGCGAGATTGACAGTGATGGTTACTGCAATGGACTGCCAGGAACTGCTTGAAAGGCTTTTAATACGTCTAGACACAGAAAAGGGCTCCTCTGGGCATGTGGACAAATCCTCTAATAATAATGTAGAAGGTGAAGGACAGCCTGTACATGAGTTGAACGGTAAAAATGATGATGATGTGAAAGCTTCTGTGTGTTAA 2520 0.419 MGGGGRGGRSRTQRKHFRQSRENVWKRSKSDPDPSSNSENQNQNQNQNTTWTPFATQNTAFDAYYKEQGIVPSQEWDEFVALLRTPLPASFRINSSSQFSDDIRSQLENDFVHSLRSEVVEGGETEAIRPLPWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSTTAGSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNRNHERMEFDLNIGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGMGHGLHSLQVLIAMRGLSLLKIGGRMVYSTCSMNPIENEAVVAEVLRRCGGSVKLVDVSSELPQLIRRPGLKRWKVYDKGTWLASYKDVPKFRRSIILHSMFPSGRGCHQDLVDSNCNVDMGYDITNGVNGNAEDDIQEAENPVMPECAEEVSDFPLEHCMRIVPHDQNTGAFFIAVLQKVSPLPAIPEKQKIEIDEKYVEPANQSLENAQVLQINSSESSHEEVLKAVSEENVNDNEPKTEDLEVGPVTCEEQNSEETEEPHNVQNIAKKIPGKRKLQIQGKWRGVDPVVFFKDEAIINSIRDFYGINEHFPFDGHLVTRNNDTSHVKRIYYVSKSVKDVLELNFSVGQQLKITSIGLKMFERQTARQGTSAPCTFRISSEGLPLILPYITKQILRASPVVFKHLLQNKDVKFEDFDDAEFGEKAANLLPGCCVVIMDKGNTVASEPLKEDESTIAIGCWKGRARLTVMVTAMDCQELLERLLIRLDTEKGSSGHVDKSSNNNVEGEGQPVHELNGKNDDDVKASVC* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00958 839 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 13 805 IPR023267 GO:0001510
Rops2g00958 839 MobiDBLite consensus disorder prediction 17 33 - -
Rops2g00958 839 MobiDBLite consensus disorder prediction 34 51 - -
Rops2g00958 839 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 56 398 - -
Rops2g00958 839 PRINTS RNA (C5-cytosine) methyltransferase signature 284 296 IPR023267 GO:0001510
Rops2g00958 839 PRINTS RNA (C5-cytosine) methyltransferase signature 474 491 IPR023267 GO:0001510
Rops2g00958 839 PRINTS RNA (C5-cytosine) methyltransferase signature 194 204 IPR023267 GO:0001510
Rops2g00958 839 PRINTS RNA (C5-cytosine) methyltransferase signature 334 350 IPR023267 GO:0001510
Rops2g00958 839 MobiDBLite consensus disorder prediction 824 839 - -
Rops2g00958 839 Pfam 16S rRNA methyltransferase RsmB/F 184 367 IPR001678 GO:0008168
Rops2g00958 839 Gene3D Vaccinia Virus protein VP39 55 401 IPR029063 -
Rops2g00958 839 MobiDBLite consensus disorder prediction 1 51 - -
Rops2g00958 839 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 140 161 IPR023270 GO:0016428
Rops2g00958 839 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 663 675 IPR023270 GO:0016428
Rops2g00958 839 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 368 387 IPR023270 GO:0016428
Rops2g00958 839 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 79 492 IPR001678 GO:0008168
Rops2g00958 839 ProSitePatterns NOL1/NOP2/sun family signature. 283 294 IPR018314 GO:0003723|GO:0008168
Rops2g00958 839 MobiDBLite consensus disorder prediction 803 839 - -
Rops2g00958 839 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 62 492 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00958 Rops-Chr2 13375883 13384345 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00958 K15334 - gmx:100808859 1387.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00958 2 13375883 13384345 Rops2g00958 2 13375883 13384345 ECH
Rops2g00958 2 13375883 13384345 Rops11g03816 11 71911158 71917374 PCT