LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g03816	ATGGGGGAAGGAAAAGGAGGGAGGGGTGGCACTGAGAGAAAGCAGTTAGAGCAGATTAAAGAGAATGAGAGGAAGTGGAAGCGTCCCAAATCAGAACCAAATAATCCTAATTGGAACCCTTTCGCAACTCCAAACCCTGATTTCGATCACTATTACAAGGAGCAGAGAATCGTGTCCTCAGAAGAATGGGATACATTCATGCAAGTTCTCAGAACTCCACTTCCTGCGGCATTCAGAATCAATTCCACTAGCAGGTTTTCTGCGGATATACGGTCTCAACTGGAGAATGACTTTGCGCATTCTCTTCAGGTTGAGGTTGTTGAAGGTGATGATGATGATGAGGCTATTAAACCTTTGCCATGGTATCCTGAGAATCTTGCTTGGCATTCTAATTTTTCACGTAAGCAGCTCAGGAAGAATCAAACACTTGCAAGGTTTCATGAATTCTTAAAGCTACAAAATGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGTGCCCCCTCTGTTCTTGGATGTACATTCAAATCATTTTGTACTTGATATGTGTGCTGCGCCAGGTTCAAAAACATTCCAGTTGCTTGAGATTTTACACCGATCAACTAAAGCTAGATCACTGCCTGATGGAATGGTAGTAGCAAATGATCTAGATGTCCAAAGATGTAATCTTCTCATCCACCAAACAAAACGAATGTGCACAGCCAACCTAATTGTCACTAATCATGAAGCTCAGCACTTCCCGGGATGTCATTTAAACAGGAATTGTGATACAATGGAGCCAGATCAGCATATTGCCCAACTGTTATTTGATCGTGTTCTGTGTGATGTACCATGCAGTGGAGATGGTACCCTTCGTAAGGCTCCTGATCTCTGGAGGAAATGGAACACAGGCACTGGAAATGGGCTTCATAACCTACAAATTTTAATTGCTATGCGAGGTGTATCTTTACTTAAAGTTGGTGGAAGAATGGTTTATTCAACATGCTCAATGAATCCTATTGAAAATGAAGGTGTCGTTGCAGAGGTTTTGCGGAGGTGTGAAGGATCTATTGAACTTGTTGATGTCTCCAGGGAGCTTCCCCAACTTATTCGTCGGCCAGGTCTTAAGAAATGGAAGGTATGTGACAAGGGCATGTTGTTGGTATCTTGCAAAGACGTTCCCAAGTTTCGTAGAAGTGTAATTCTTCCCAGCATGTTTCCAAATGGCGGAAGCTATCAGGATAGGATTGACAGTAACAGTAATTGTGATATCGGCATTGGAGATGGTATTACTGGTGATGTTAATGGAAATTCTGAAGATGGTGTTCAAGCAATGGAGAATCCTGAGATGCATGAGTTTACTAAGGAAGTTTCTGATTTCCCGCTAGAGCGATGCATGAGATTAGTGCCTCATGATCAGAATACTGGAGCCTTCTTTATTGCTGTATTGCAAAAAGTTTCTCCTCTGCCAGCAATTCAGGTAAAAGCTAGAAAAGAAGTCAATAATCAACATGGAGAATCAGCAAATCAGGGCAATGAGGATGCACAAGTATCGCAGATTAATCCATCAGAAAATACACTTGAAGAAGTTTCAGAGGCTAATATAAATGACAATGAACCCAATACAGAAGATATGAAAGTTAGCCCTGTTATATGTGAAGAAGGGGATTCCAAGGAAGCCCAAGAGCCCCACAATATAGAAAACATAGCAAGGATCACTCCAGGCAAAAGAAAGCTGCAGATACGAGGCAAATGGAGAGGCATTGACCCTGTTGTCTTCTTCAAAGATGAAGTAATTATTAACAGCATAAAGGCATTTTATGGTATTGACAAGCAGTTTCCATTCAATGGTCACCTGGTAACAAGAAACATTGATACAAGCCATGTGAAAAGAATTTACTATGTCTCCAAGTCTATCAAGAATGTTCTCGAGTTGAATTTCTCAGTTGGGCAGCTACTTAAAATAACTTCCGTTGGCCTGAAGATTTTTGAAAGACAAACATCACGTGAAAGTAGCTCGGCGCCATGTGCTTTCCGGATCACTTCTGAAGGATTGCCCCTTATTCTCCCTCACATCACCAAACAGATTCTATGTGCATCTCCTATAGACTTCAAGCATCTTCTGCAGTATAAAGCTGTAAAATTTGCAGATTTTGTTGATGCTGAGTTTGGTGATCGGGCAGCAAACCTAATGCCAGGCTGTTGTGTGGTAGTTCTGGGTGAAGGGAGCAGAGCTGCTACAACAGAGGCTATCCAAGTGGATGAGTCAACAATAGCCATTGGATGCTGGAAGGGTAAGGTAAGTTTGACCGTGATGGTTACTGCAATGGAATGCCAGGAACTGCTTGAAAGGCTTTTAGTGCGTTTGGACACACTAACAGTAAGGGGCTCCTCCATGCATGAGGACAAACCGTCTAATAACGTGGGAGATAAAGCACAGGAATCGAACGGTAAAGATGAAGATGCGTTGGTGTTAAAAGCGAATAGTAACTAA	2478	0.4205	MGEGKGGRGGTERKQLEQIKENERKWKRPKSEPNNPNWNPFATPNPDFDHYYKEQRIVSSEEWDTFMQVLRTPLPAAFRINSTSRFSADIRSQLENDFAHSLQVEVVEGDDDDEAIKPLPWYPENLAWHSNFSRKQLRKNQTLARFHEFLKLQNEIGNITRQEAVSMVPPLFLDVHSNHFVLDMCAAPGSKTFQLLEILHRSTKARSLPDGMVVANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCHLNRNCDTMEPDQHIAQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGTGNGLHNLQILIAMRGVSLLKVGGRMVYSTCSMNPIENEGVVAEVLRRCEGSIELVDVSRELPQLIRRPGLKKWKVCDKGMLLVSCKDVPKFRRSVILPSMFPNGGSYQDRIDSNSNCDIGIGDGITGDVNGNSEDGVQAMENPEMHEFTKEVSDFPLERCMRLVPHDQNTGAFFIAVLQKVSPLPAIQVKARKEVNNQHGESANQGNEDAQVSQINPSENTLEEVSEANINDNEPNTEDMKVSPVICEEGDSKEAQEPHNIENIARITPGKRKLQIRGKWRGIDPVVFFKDEVIINSIKAFYGIDKQFPFNGHLVTRNIDTSHVKRIYYVSKSIKNVLELNFSVGQLLKITSVGLKIFERQTSRESSSAPCAFRITSEGLPLILPHITKQILCASPIDFKHLLQYKAVKFADFVDAEFGDRAANLMPGCCVVVLGEGSRAATTEAIQVDESTIAIGCWKGKVSLTVMVTAMECQELLERLLVRLDTLTVRGSSMHEDKPSNNVGDKAQESNGKDEDALVLKANSN*	826

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g03816	825	PANTHER	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	17	788	IPR023267	GO:0001510
	Rops11g03816	825	MobiDBLite	consensus disorder prediction	792	825	-	-
	Rops11g03816	825	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	60	481	IPR029063	-
	Rops11g03816	825	ProSitePatterns	NOL1/NOP2/sun family signature.	271	282	IPR018314	GO:0003723\|GO:0008168
	Rops11g03816	825	MobiDBLite	consensus disorder prediction	799	816	-	-
	Rops11g03816	825	PRINTS	RNA (C5-cytosine) methyltransferase signature	322	338	IPR023267	GO:0001510
	Rops11g03816	825	PRINTS	RNA (C5-cytosine) methyltransferase signature	182	192	IPR023267	GO:0001510
	Rops11g03816	825	PRINTS	RNA (C5-cytosine) methyltransferase signature	272	284	IPR023267	GO:0001510
	Rops11g03816	825	PRINTS	RNA (C5-cytosine) methyltransferase signature	463	480	IPR023267	GO:0001510
	Rops11g03816	825	MobiDBLite	consensus disorder prediction	1	31	-	-
	Rops11g03816	825	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	648	660	IPR023270	GO:0016428
	Rops11g03816	825	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	128	149	IPR023270	GO:0016428
	Rops11g03816	825	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	356	375	IPR023270	GO:0016428
	Rops11g03816	825	Pfam	16S rRNA methyltransferase RsmB/F	172	349	IPR001678	GO:0008168
	Rops11g03816	825	MobiDBLite	consensus disorder prediction	1	45	-	-
	Rops11g03816	825	Gene3D	Vaccinia Virus protein VP39	44	389	IPR029063	-
	Rops11g03816	825	FunFam	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein	43	386	-	-
	Rops11g03816	825	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	66	481	IPR001678	GO:0008168

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g03816	Rops-Chr11	71911158	71917374	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g03816	K15334		-	gmx:100808598	1246.49

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops2g00958	2	13375883	13384345	Rops11g03816	11	71911158	71917374	PCT