Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00678 ATGGGTTGTCATGAGAGATCAACATTAGATTCCAACCATACAACTAGGGAAGGAACAATAGAGCGAGTGGTTCTAGAAGATGCAGTGAAAGACAGCACCGAGACTGAACTCACCAAAATCCGTGTTATGAGAACACTTGTTGAATCACGGGATCCCTTTGCTAAGGAAGAGGGTGATTTGATGATTAGAAGATTCCTTCGTGCTCGTGATTTAGATGTTGAGAAGGCTTCAGCAATGTTCCTCAAGTACTTGAAATGGAGACATTCTTTTGTTCCGAATGGTTCTATATCTTTGTCAGAGGTTCCTAATGAACTTTCACAGAACAAGATGTTCGCACAAGGACACGATAAGATAGGTCGACCTATCACTATTGTCTTCGGTGGAAGACATTTTCAAAACAAAGATGGTGGTTTAGATGAATTCAAACGGTTTGTAGTCTATGCTCTTGATAAACTATGTGCAAGTATGCCACCTGGGCAAGAAAAGTTTGTTGGTATAGGAGACCTTAAGGGATGGGGATACTCAAACAGTGACATACGAGGATACTTTGGTGCTCTGACCATTTTGCAGGATTACTACCCCGAAAGATTAGGGAAATTGTTTATTATCCATGCACCTTACATTTTTATGAAAGTTTGGAAAATTATTTACCCGTTCATTGACAACAAAACCAAGAAGAAGATAGTATTTGTGGAGCAAAATAAGGTGAAATCAACACTACTAGAAGATATAGACGAAAATCAGATCCCAGAGATATATGGTGGCCCACTGCCATTAGTCCCGATCCAAGATAGTTAA 798 0.3972 MGCHERSTLDSNHTTREGTIERVVLEDAVKDSTETELTKIRVMRTLVESRDPFAKEEGDLMIRRFLRARDLDVEKASAMFLKYLKWRHSFVPNGSISLSEVPNELSQNKMFAQGHDKIGRPITIVFGGRHFQNKDGGLDEFKRFVVYALDKLCASMPPGQEKFVGIGDLKGWGYSNSDIRGYFGALTILQDYYPERLGKLFIIHAPYIFMKVWKIIYPFIDNKTKKKIVFVEQNKVKSTLLEDIDENQIPEIYGGPLPLVPIQDS* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00678 265 Gene3D - 4 263 IPR036865 -
Rops2g00678 265 SUPERFAMILY CRAL/TRIO N-terminal domain 28 93 IPR036273 -
Rops2g00678 265 SUPERFAMILY CRAL/TRIO domain 100 258 IPR036865 -
Rops2g00678 265 Pfam CRAL/TRIO domain 107 255 IPR001251 -
Rops2g00678 265 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 98 261 IPR001251 -
Rops2g00678 265 CDD SEC14 114 255 IPR001251 -
Rops2g00678 265 SMART CRAL_TRIO_N_2 58 83 IPR011074 -
Rops2g00678 265 PANTHER OS03G0850700 PROTEIN 30 264 - -
Rops2g00678 265 SMART sec14_4 103 258 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00678 Rops-Chr2 9650967 9655565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00678 64 251 Acyl Lipid Metabolism Gene Families AT1G55840 28.293 7.92e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00678 - - gmx:548015 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00678 2 9650967 9655565 Rops2g00678 2 9650967 9655565 ECH
Rops2g00678 2 9650967 9655565 Rops10g00875 10 19794198 19796316 PCT