Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00875 ATGGAAACAGTGAGCACTGAGCCTGGAAGATCAGCATTGGATTCCAAACATGAGTTGGCTAAAGAAGAAGCAAGAGCACGAGTGGTTCAAGATGACAGAGCATTGAAAGATAGCACTGACGCTGAACGCACCAAAATCACTCTCATGAGAGCTTTAGTTGAAAGCAAGGATCCATCTTCTGAGGAAGTAGATGATTTGATGCTTAGAAGATTCTTGCGTGCTCGTGATTTGGATGTAGAGAAGGGTTCTGCAATGTTCCTCAAGTACTTGAAATGGAGACGTTCTTTTGTTCCAAATGGTTTCATATCCCCTTCAGAGATTCCTGAAGATATTGCTCAGGGCAAGATGTTTGTGCAAGGAGTTGATAAGAAGGGTCGACCTATAACTGTTGCCTTTGCTGCAAAACATTTTCAAAACAAAAATGGTTCGGATGGATTCAAAAGGTATGTAGTCTTTGCTCTTGAAAAACTATGTTCAAGGATGCCACCAGGGCAAGAAAAGTTTCTTGCTATTGGAGATATCAAGGGATGGGGATATGCAAACAGTGACCTTCGTGGATACCTTAATGCTCTAACCATTTTACAGGATTACTACCCTGAAAGATTGGGGAAGTTGTTTATTGTCCACGCACCTTACATGTTTATGAAAGTATGGAAAATTGTTTACCCTTTCATTGATGACAATACAAAGAAAAAGATAGTGTTTGTGGAGAACAAAAAGCTGAAATCAACACTGTTGGAAGAGATAGATGAGAGTCAGCTCCCAGAGATATATGGAGGCCAACTTCCATTAGTCCCAATCCAAGATAGTTGA 813 0.4059 METVSTEPGRSALDSKHELAKEEARARVVQDDRALKDSTDAERTKITLMRALVESKDPSSEEVDDLMLRRFLRARDLDVEKGSAMFLKYLKWRRSFVPNGFISPSEIPEDIAQGKMFVQGVDKKGRPITVAFAAKHFQNKNGSDGFKRYVVFALEKLCSRMPPGQEKFLAIGDIKGWGYANSDLRGYLNALTILQDYYPERLGKLFIVHAPYMFMKVWKIVYPFIDDNTKKKIVFVENKKLKSTLLEEIDESQLPEIYGGQLPLVPIQDS* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00875 270 SUPERFAMILY CRAL/TRIO N-terminal domain 35 101 IPR036273 -
Rops10g00875 270 Pfam CRAL/TRIO domain 113 260 IPR001251 -
Rops10g00875 270 Gene3D - 2 269 IPR036865 -
Rops10g00875 270 PANTHER OS03G0850700 PROTEIN 36 269 - -
Rops10g00875 270 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 104 266 IPR001251 -
Rops10g00875 270 CDD SEC14 117 261 IPR001251 -
Rops10g00875 270 SUPERFAMILY CRAL/TRIO domain 106 263 IPR036865 -
Rops10g00875 270 SMART sec14_4 110 263 IPR001251 -
Rops10g00875 270 MobiDBLite consensus disorder prediction 11 40 - -
Rops10g00875 270 SMART CRAL_TRIO_N_2 64 89 IPR011074 -
Rops10g00875 270 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00875 Rops-Chr10 19794198 19796316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00875 68 256 Acyl Lipid Metabolism Gene Families AT1G55840 27.358 7.14e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00875 - - gmx:100797666 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00875 10 19794198 19796316 Rops10g00875 10 19794198 19796316 ECH
Rops2g00678 2 9650967 9655565 Rops10g00875 10 19794198 19796316 PCT