Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00658 ATGATAACCATCATAACCCAAACTTCAGAAGCAAAAGAATTCCCAATTTTGATGAATCAAACCAATTTTGTATTCTACAATGCTAGTCAAGTGCTAAATCAGTGTTTGGTATTCGAGGAGTCGAGGGCTTCTGCCAGCAATTCAGGAACCATGGCTAGGGTTTTGGCTCAGTCAATTAATGTCCCTGGCCTAGTGGCAGGGCAAAGGCATGGTCATCATAAGGGTTCAGCAAAATTAAAAAGATCTGTCAAAATGATGTCTGCCTTACGAATGCCTGCATTAAGACTGACAAGTTTCTCGGGACTGCGTACCTTTAATCATTTGGATACTATGTTGAGACCTGGACTGGATTTTCATTCTAAGGTGTTAACTGCAACTACATCTAGGCGAGCTAGGGCTAGCAGATGCATACCTAAAGCCATGTTTGAACGTTTCACAGAGAAAGCAATCAAAGTAATTATGCTGGCCCAGGAGGAAGCGAGACGGCTGGGTCACAATTTTGTTGGAACAGAACAGATTCTATTGGGTCTTATTGGTGAAGGCACTGGTATTGCTGCTAAGGTTCTAAAGTCTATGGGAATTAACCTTAAAGATGCACGTGTGGAAGTGGAAAAGATCATTGGAAGGGGCAGTGGATTTGTTGCTGTTGAGATTCCGTTTACTCCTCGTGCAAAGCGTGTTTTGGAACTCTCACTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCTGAGCACTTGCTTCTGGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAGAACCTGGGTGCTGATCCAACTAATATTCGCACTCAGGTTATTCGCATGGTTGGTGAGGGTGCTGACAGCGTTGGTGCTCCTGTTGGCACTGGAAGTAGTAGCAATAAGATGCCAACTTTGGAGGAATATGGCACCAATTTGACCAAACTAGCAGAGGAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGCAACAAATTGAACGTGTTACCCAAATTTTGGGTCGTCGTACCAAAAATAATCCTTGCCTCATTGGAGAACCAGGTGTTGGAAAGACAGCTATTGCTGAAGGTCTTGCCCAACGGATTGCAAATGGTGATGTTCCTGAAACCATAGAGGGAAAGAAGGTTATAACCCTTGATATGGGTCTACTTGTAGCTGGTACTAAATATCGTGGAGAATTTGAGGAGAGATTGAAGAAACTAATGGAGGAAATCAAACAAAGTGATGAGATAATACTTTTCATTGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCAGCAAACATATTAAAACCAGCTCTTGCCAGAGGTGAACTACAGTGTATAGGAGCAACAACACTGGACGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAGAGGCGATTCCAGCCAGTTAAAGTGCCAGAGCCAACCGTGGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGCTATGAGATTCACCACAAGCTCCGTTATACTGATGATGCTCTAGTAGCTGCTGCACAGCTGTCACATCAATATATCAGTGATCGGTTTTTGCCCGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCCCGAGTCCGGCTTCAACATGCACAGTTACCTGAAGAAGCGAGAGAGCTTGACAAGGAGGTCAGGCAGATTGTGAAGGAGAAAGAGGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAGCTACGAGATAAAGAAATGGATCTTAAGACACAGATCTCAGCACTTGTAGAAAAAGGCAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGATGAAGGTCCAGTCGTGACTGAAGTTGACATACAACATATTGTCTGTTCCTGGACTGGTATTCCTGTTGAGAAAGTCTCCACAGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACCTTGCATAAGCGAGTTATTGGTCAGGATGAAGCAGTAAAAGCCATTAGCCGGGCTATCCGTCGAGCCCGGGTTGGTCTGAAGAACCCTAATCGTCCAATTGCCAGTTTCATCTTTTCTGGGCCAACTGGTGTGGGGAAATCCGAGTTGGCCAAAGCACTGGCTGCATACTACTTTGGTTCTGAAGAGGCCATGATTAGGCTTGACATGAGTGAATTTATGGAAAGGCACACAGTCTCCAAACTCATCGGTTCACCTCCTGGATATGTTGGTTACACTGAGGGTGGTCAACTGACTGAGGCAGTTCGGCGTCGTCCCTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGGCTAACAGACAGTAAGGGACGGACTGTGGACTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGACGTCGATTAGGATTTGACCTTGATTATGATGAGAAGGATAGCAGTTATAACCGAATCAAGAGCTTGGTGACTGAGGAGCTGAAGCAATACTTCAGGCCTGAGTTTTTGAATAGGTTGGATGAAATGATCGTTTTCAGGCAACTCACAAAACTGGAGGTGAAGGAGATAGCTGATATAATGCTGAAGGAGGTGTTTGATAGATTGAAAACCAAAGATATTGATCTTTCAGTGACCGAGAGATTTAGGGAGAGAGTGGTTGAAGAAGGTTACAATCCTAGTTATGGTGCTAGGCCTCTCAGAAGAGCCATAATGCGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTCGCTAGAGAGATTAAAGAGGGTGACTCTGTTATAGTGGATGCTGATTCTGATGGTAATGTGATTGTGCTCAACGGTAGTAGTGGTGCCCCAGAGTCACTGCCAGAGGCTCTTCCTGTGTAA 2919 0.4478 MITIITQTSEAKEFPILMNQTNFVFYNASQVLNQCLVFEESRASASNSGTMARVLAQSINVPGLVAGQRHGHHKGSAKLKRSVKMMSALRMPALRLTSFSGLRTFNHLDTMLRPGLDFHSKVLTATTSRRARASRCIPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGEGADSVGAPVGTGSSSNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIVKEKEEAVRNQDFEKAGELRDKEMDLKTQISALVEKGKEMSKAESEAGDEGPVVTEVDIQHIVCSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRLGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIDLSVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSSGAPESLPEALPV* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00658 972 FunFam Chaperone clpB 1, putative 294 485 - -
Rops2g00658 972 CDD RecA-like_ClpB_Hsp104-like 646 862 - -
Rops2g00658 972 Gene3D - 293 485 IPR027417 -
Rops2g00658 972 ProSiteProfiles Clp repeat (R) domain profile. 142 284 IPR004176 -
Rops2g00658 972 Pfam C-terminal, D2-small domain, of ClpB protein 865 945 IPR019489 -
Rops2g00658 972 Gene3D - 487 631 - -
Rops2g00658 972 ProSitePatterns Chaperonins clpA/B signature 2. 719 737 IPR028299 -
Rops2g00658 972 Gene3D - 637 863 IPR027417 -
Rops2g00658 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 579 IPR027417 -
Rops2g00658 972 SUPERFAMILY Double Clp-N motif 143 283 IPR036628 -
Rops2g00658 972 Pfam ATPase family associated with various cellular activities (AAA) 347 463 IPR003959 GO:0005524|GO:0016887
Rops2g00658 972 Coils Coil 555 575 - -
Rops2g00658 972 Pfam AAA domain (Cdc48 subfamily) 684 858 IPR003959 GO:0005524|GO:0016887
Rops2g00658 972 CDD AAA 325 477 - -
Rops2g00658 972 Gene3D UVR domain 551 615 - -
Rops2g00658 972 SMART ClpB_D2_small_2 865 955 IPR019489 -
Rops2g00658 972 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 796 810 IPR001270 GO:0005524
Rops2g00658 972 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 734 752 IPR001270 GO:0005524
Rops2g00658 972 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 763 781 IPR001270 GO:0005524
Rops2g00658 972 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 689 707 IPR001270 GO:0005524
Rops2g00658 972 FunFam ATP-dependent chaperone ClpB 865 958 - -
Rops2g00658 972 PANTHER ATP-DEPENDENT CLP PROTEASE 146 952 - -
Rops2g00658 972 Pfam Clp amino terminal domain, pathogenicity island component 232 283 IPR004176 -
Rops2g00658 972 Pfam Clp amino terminal domain, pathogenicity island component 156 208 IPR004176 -
Rops2g00658 972 Gene3D - 865 962 - -
Rops2g00658 972 Gene3D - 141 288 IPR036628 -
Rops2g00658 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 951 IPR027417 -
Rops2g00658 972 ProSiteProfiles UVR domain profile. 559 594 IPR001943 GO:0005515
Rops2g00658 972 Pfam AAA lid domain 485 587 IPR041546 -
Rops2g00658 972 SMART AAA_5 685 866 IPR003593 GO:0016887
Rops2g00658 972 SMART AAA_5 342 482 IPR003593 GO:0016887
Rops2g00658 972 FunFam ATP-dependent Clp protease ATP-binding subunit 486 571 - -
Rops2g00658 972 Coils Coil 396 416 - -
Rops2g00658 972 FunFam ATP-dependent Clp protease subunit 638 863 - -
Rops2g00658 972 ProSitePatterns Chaperonins clpA/B signature 1. 437 449 IPR018368 GO:0005524
Rops2g00658 972 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 141 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00658 Rops-Chr2 9324021 9339993 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00658 K03696 - gmx:100804035 1675.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00658 2 9324021 9339993 Rops10g00858 10 19557301 19563954 PCT