Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00858 ATGCAGCCAGGCTATTCGGGAATAATGGCTAGGGTTTTGGCTCAGTCAATTAATGTCCCTGGCCTAGTGGCTGGGCAGAGGCACAGTCAACCTAAAGGATCAGGAAAATTAAAAAGACCGGTCAAAATGATGTCTGCTTTACGAACAAATGGATTAAGAATGTCAGGTTTCTCAGGACTTCGTACTTTTAATCCTGTGGATACTATGTTGAGACCGGGACTAGATTTTCATTCTAAGGTATCAATCCTAACTTCTTCGCGACGGGCAAGGGCTACCAGATGCATACCCAAAGCCATGTTTGAACGTTTCACGGAAAAAGCGATCAAAGTAATTATGCTAGCCCAGGAGGAAGCAAGACGTCTTGGTCACAATTTTGTGGGAACAGAGCAGATTCTACTGGGTCTTATTGGTGAAGGCACCGGTATTGCCGCTAAGGTCCTAAAGTCTATGGGAATCAACCTTAAAGATGCACGTGTGGAAGTGGAGAAGATAATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAGATTCCATTTACTCCCCGTGCAAAGCGTGTTTTGGAACTTTCACTGGAGGAAGCTCGACAACTTGGTCACAATTATATTGGATCTGAGCACTTGCTTTTGGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAAAACCTGGGTGCTGATCCTACTAATATTCGCACACAGGTTATTCGCATGGTGGGTGAGAGTGCTGACAGTGTTACTGCTACTGTTGGCTCAGGAAGTAGTGGCAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACAAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTGGGAAGGCAGCCGCAAATTGAACGTGTCACGCAAATTTTAGGCCGTCGTACCAAAAATAATCCTTGTCTTATTGGAGAACCTGGTGTTGGGAAGACAGCAATTGCTGAAGGTCTTGCTCAGAGGATTGCAACTGGTGATGTACCTGAAACCATAGAGGGAAAAAAGGTTATAACCCTCGATATGGGTCTTCTTGTTGCGGGAACTAAATATCGTGGTGAGTTCGAGGAGAGGTTGAAGAAACTGATGGAAGAAATCAAACAAAGTGATGAGATAATACTTTTTATCGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCTGCTAACATTCTAAAACCAGCTCTTGCAAGAGGTGAACTACAGTGTATTGGAGCCACTACATTGGACGAATACAGGAAGCACATCGAGAAAGATCCAGCTTTGGAGAGACGATTCCAGCCAGTTAAAGTACCAGAGCCAACTGTAGATGAAACCATACTAATACTGAAAGGACTTAGGGAACGTTATGAGATTCACCACAAGCTCCGCTATACTGATGAGGCTCTTGTAGCTGCTGCACAGCTGTCGTACCAGTATATCAGTGATCGATTTTTGCCCGACAAAGCTATAGATCTGGTTGATGAAGCTGGTTCACGGGTCCGGCTTCAACATGCACAGTTACCTGAAGAAGCAAGAGAACTTGACAAGGAGGTCAGGCAGATTATTAAGGAGAAAGAAGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAGCTACGAGATAGAGAAATGGATCTGAAGGCACAGATCTCAACACTTGTACAGAAAGGCAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGATGAAGGTCCTGTTGTGACTGAAGCTGACATACAACATATTGTCTCCTCCTGGACTGGAATTCCTGTTGAAAAAGTCTCAACAGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACTTTACACAAGCGTGTCATTGGTCAGGATGAGGCAGTGAAAGCCATTAGTCGTGCTATCCGTCGAGCCCGAGTTGGATTGAAGAACCCTAATCGTCCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAATTGGCCAAAGCATTGGCCGCATACTACTTTGGCTCTGAAGAAGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACTGTCTCCAAACTTATTGGTTCACCTCCTGGATATGTCGGTTACACCGAAGGTGGTCAATTGACCGAGGCAGTTAGGCGTCGTCCTTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGATTAACAGACAGTAAGGGCAGAACTGTGGATTTCAAGAATACACTTCTTATAATGACATCGAATGTCGGAAGCAGCGTGATTGAGAAAGGAGGCCGCAGAATTGGATTTGATCTGGATTATGACGAGAAGGATAGCAGTTATAATAGAATCAAGAGCTTGGTGACTGAGGAGCTGAAACAATACTTCAGGCCAGAATTTTTGAATAGGTTGGATGAAATGATTGTTTTCAGACAACTCACAAAACTGGAGGTGAAGGATATAGCTGACATAATGCTCAAGGAGGTGTTTGAAAGACTGAAGACCAAAGATATTGAACTTCAAGTGACAGAAAGATTTAGGGACAGGGTGGTTGAGGAAGGTTATAATCCTAGTTATGGAGCTAGGCCTCTAAGAAGAGCCATAATGCGACTTCTGGAGGATAGCATGGCTGAGAAGATGCTTGCCAGAGAGATCAAAGAGGGCGATTCTGTTATAGTGGATGTTGATTCTGATGGTAATGTGATTGTGCTCAATGGTAGCAGCGGTGCCCCCGAGTCATTACCAGAGGCTCTTCCTGTATAA 2793 0.449 MQPGYSGIMARVLAQSINVPGLVAGQRHSQPKGSGKLKRPVKMMSALRTNGLRMSGFSGLRTFNPVDTMLRPGLDFHSKVSILTSSRRARATRCIPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIATGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETILILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLQHAQLPEEARELDKEVRQIIKEKEEAVRNQDFEKAGELRDREMDLKAQISTLVQKGKEMSKAESEAGDEGPVVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKDIADIMLKEVFERLKTKDIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGAPESLPEALPV* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00858 930 Gene3D - 823 920 - -
Rops10g00858 930 Gene3D - 99 248 IPR036628 -
Rops10g00858 930 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 99 247 - -
Rops10g00858 930 FunFam ATP-dependent Clp protease ATP-binding subunit 444 529 - -
Rops10g00858 930 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 538 IPR027417 -
Rops10g00858 930 Pfam AAA lid domain 443 544 IPR041546 -
Rops10g00858 930 Pfam ATPase family associated with various cellular activities (AAA) 305 421 IPR003959 GO:0005524|GO:0016887
Rops10g00858 930 Coils Coil 354 374 - -
Rops10g00858 930 Gene3D UVR domain 509 573 - -
Rops10g00858 930 Pfam Clp amino terminal domain, pathogenicity island component 190 241 IPR004176 -
Rops10g00858 930 Pfam Clp amino terminal domain, pathogenicity island component 114 166 IPR004176 -
Rops10g00858 930 PANTHER ATP-DEPENDENT CLP PROTEASE 104 910 - -
Rops10g00858 930 FunFam ATP-dependent Clp protease subunit 596 821 - -
Rops10g00858 930 Gene3D - 595 821 IPR027417 -
Rops10g00858 930 FunFam ATP-dependent chaperone ClpB 823 916 - -
Rops10g00858 930 SMART ClpB_D2_small_2 823 913 IPR019489 -
Rops10g00858 930 SUPERFAMILY Double Clp-N motif 101 242 IPR036628 -
Rops10g00858 930 ProSiteProfiles Clp repeat (R) domain profile. 100 242 IPR004176 -
Rops10g00858 930 Pfam AAA domain (Cdc48 subfamily) 642 816 IPR003959 GO:0005524|GO:0016887
Rops10g00858 930 ProSitePatterns Chaperonins clpA/B signature 2. 677 695 IPR028299 -
Rops10g00858 930 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 910 IPR027417 -
Rops10g00858 930 Gene3D - 445 589 - -
Rops10g00858 930 FunFam Chaperone clpB 1, putative 251 443 - -
Rops10g00858 930 ProSiteProfiles UVR domain profile. 517 552 IPR001943 GO:0005515
Rops10g00858 930 Pfam C-terminal, D2-small domain, of ClpB protein 823 903 IPR019489 -
Rops10g00858 930 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 647 665 IPR001270 GO:0005524
Rops10g00858 930 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 754 768 IPR001270 GO:0005524
Rops10g00858 930 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 721 739 IPR001270 GO:0005524
Rops10g00858 930 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 692 710 IPR001270 GO:0005524
Rops10g00858 930 SMART AAA_5 643 824 IPR003593 GO:0016887
Rops10g00858 930 SMART AAA_5 300 440 IPR003593 GO:0016887
Rops10g00858 930 Coils Coil 513 533 - -
Rops10g00858 930 CDD RecA-like_ClpB_Hsp104-like 604 820 - -
Rops10g00858 930 CDD AAA 283 435 - -
Rops10g00858 930 ProSitePatterns Chaperonins clpA/B signature 1. 395 407 IPR018368 GO:0005524
Rops10g00858 930 Gene3D - 251 443 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00858 Rops-Chr10 19557301 19563954 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00858 K03696 - gmx:100804035 1707.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00858 10 19557301 19563954 Rops10g00858 10 19557301 19563954 ECH
Rops2g00658 2 9324021 9339993 Rops10g00858 10 19557301 19563954 PCT